SISMID-Module-2.bib

@incollection{bjornstadAdvancedNextGenerationMatrix2018,
  title = {Advanced: {{The Next-Generation Matrix}}},
  booktitle = {Epidemics: {{Models}} and {{Data}} Using {{R}}},
  author = {Bjørnstad, Ottar N.},
  date = {2018},
  series = {Use {{R}}!},
  pages = {51},
  publisher = {{Springer International Publishing}},
  location = {{Cham}},
  doi = {10.1007/978-3-319-97487-3},
  url = {http://link.springer.com/10.1007/978-3-319-97487-3},
  urldate = {2022-06-09},
  isbn = {978-3-319-97486-6 978-3-319-97487-3},
  langid = {english},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Bjørnstad_2018_Epidemics.pdf}
}

@book{diekmann2000mathematical,
  title = {Mathematical Epidemiology of Infectious Diseases: {{Model}} Building, Analysis and Interpretation},
  author = {Diekmann, O. and Heesterbeek, J.A.P.},
  date = {2000},
  series = {Wiley Series in Mathematical \& Computational Biology},
  publisher = {{Wiley}},
  url = {https://books.google.ca/books?id=5VjSaAf35pMC},
  isbn = {978-0-471-49241-2},
  lccn = {99052964},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Diekmann_Heesterbeek_2000_Mathematical epidemiology of infectious diseases.pdf}
}

@article{diekmannConstructionNextgenerationMatrices2009,
  title = {The Construction of Next-Generation Matrices for Compartmental Epidemic Models},
  author = {Diekmann, O. and Heesterbeek, J. A. P. and Roberts, M. G.},
  date = {2009-11-05},
  journaltitle = {Journal of The Royal Society Interface},
  volume = {7},
  number = {47},
  pages = {873--885},
  publisher = {{Royal Society}},
  doi = {10.1098/rsif.2009.0386},
  url = {https://doi.org/10.1098/rsif.2009.0386},
  urldate = {2023-03-02},
  note = {doi: 10.1098/rsif.2009.0386},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Diekmann et al_2009_The construction of next-generation matrices for compartmental epidemic models.pdf}
}

@inproceedings{drakeEstimation2019,
  title = {Estimation},
  author = {Drake, John M and Rohani, Pejman},
  date = {2019-07-09},
  location = {{Seattle, Washington}},
  url = {http://daphnia.ecology.uga.edu/drakelab/wp-content/uploads/2019/07/estimation.pdf},
  urldate = {2023-07-05},
  eventtitle = {Summer {{Institute}} in {{Statistical Modeling}} of {{Infectious Diseases}}},
  file = {/Users/cfa5228/Zotero/storage/2HXGLAEG/estimation.pdf}
}

@article{graisEstimatingTransmissionIntensity2006,
  title = {Estimating Transmission Intensity for a Measles Epidemic in {{Niamey}}, {{Niger}}: Lessons for Intervention},
  shorttitle = {Estimating Transmission Intensity for a Measles Epidemic in {{Niamey}}, {{Niger}}},
  author = {Grais, R.F. and Ferrari, M.J. and Dubray, C. and Bjørnstad, O.N. and Grenfell, B.T. and Djibo, A. and Fermon, F. and Guerin, P.J.},
  date = {2006-09-01},
  journaltitle = {Transactions of The Royal Society of Tropical Medicine and Hygiene},
  volume = {100},
  number = {9},
  pages = {867--873},
  issn = {0035-9203},
  doi = {10.1016/j.trstmh.2005.10.014},
  url = {https://doi.org/10.1016/j.trstmh.2005.10.014},
  urldate = {2023-06-27},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Grais et al_2006_Estimating transmission intensity for a measles epidemic in Niamey, Niger.pdf;/Users/cfa5228/Zotero/storage/M9UT43G2/1936292.html}
}

@article{graisTimeEssenceExploring2008,
  title = {Time Is of the Essence: Exploring a Measles Outbreak Response Vaccination in {{Niamey}}, {{Niger}}},
  shorttitle = {Time Is of the Essence},
  author = {Grais, R.F and Conlan, A.J.K and Ferrari, M.J and Djibo, A and Le Menach, A and Bjørnstad, O.N and Grenfell, B.T},
  date = {2008-01-06},
  journaltitle = {J R Soc Interface},
  volume = {5},
  number = {18},
  eprint = {17504737},
  eprinttype = {pmid},
  pages = {67--74},
  issn = {1742-5689},
  doi = {10.1098/rsif.2007.1038},
  url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605500/},
  urldate = {2023-06-27},
  pmcid = {PMC2605500},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Grais et al_2008_Time is of the essence.pdf}
}

@article{heesterbeekBriefHistoryR02002,
  title = {A {{Brief History}} of {{R0}} and a {{Recipe}} for Its {{Calculation}}},
  author = {Heesterbeek, J.A.P.},
  date = {2002-09-01},
  journaltitle = {Acta Biotheoretica},
  volume = {50},
  number = {3},
  pages = {189--204},
  issn = {1572-8358},
  doi = {10.1023/A:1016599411804},
  url = {https://doi.org/10.1023/A:1016599411804},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Heesterbeek_2002_A Brief History of R0 and a Recipe for its Calculation.pdf}
}

@article{heffernanPerspectivesBasicReproductive2005,
  title = {Perspectives on the Basic Reproductive Ratio},
  author = {Heffernan, J.M and Smith, R.J and Wahl, L.M},
  date = {2005-09-22},
  journaltitle = {J R Soc Interface},
  volume = {2},
  number = {4},
  eprint = {16849186},
  eprinttype = {pmid},
  pages = {281--293},
  issn = {1742-5689},
  doi = {10.1098/rsif.2005.0042},
  url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1578275/},
  urldate = {2023-03-09},
  pmcid = {PMC1578275},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Heffernan et al_2005_Perspectives on the basic reproductive ratio.pdf}
}

@article{hurfordNextgenerationToolsEvolutionary2009,
  title = {Next-Generation Tools for Evolutionary Invasion Analyses},
  author = {Hurford, Amy and Cownden, Daniel and Day, Troy},
  date = {2009-12-02},
  journaltitle = {Journal of The Royal Society Interface},
  volume = {7},
  number = {45},
  pages = {561--571},
  publisher = {{Royal Society}},
  doi = {10.1098/rsif.2009.0448},
  url = {https://royalsocietypublishing.org/doi/full/10.1098/rsif.2009.0448},
  urldate = {2023-06-12},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Hurford et al_2009_Next-generation tools for evolutionary invasion analyses.pdf},
  keywords = {adaptive-dynamics,basic-reproduction-number,evolutionarily-stable-strategy,game-theory,invasion-fitness,next-generation-operator}
}

@incollection{keelingIntroductionSimpleEpidemic2008,
  title = {Introduction to Simple Epidemic Models},
  booktitle = {Modeling Infectious Diseases in Humans and Animals},
  author = {Keeling, Matthew James and Rohani, Pejman},
  date = {2008},
  pages = {21--22},
  publisher = {{Princeton University Press}},
  location = {{Princeton}},
  isbn = {978-0-691-11617-4},
  langid = {english},
  annotation = {OCLC: ocn163616681},
  keywords = {Communicable-Disease-Control,Communicable-diseases,Communicable-Diseases,Communicable-diseases-in-animals,Epidemiologic-Methods,epidemiology,Mathematical-models,methods,{Models,-Theoretical}}
}

@inproceedings{kingAgeStructuredModels2011,
  title = {Age {{Structured Models}}},
  author = {King, Aaron A and Wearing, Helen J},
  date = {2011-06-24},
  url = {https://ms.mcmaster.ca/~bolker/eeid/2011_eco/waifw.pdf},
  eventtitle = {Ecology and {{Evolution}} of {{Infectiou Diseases}}},
  langid = {english},
  file = {/Users/cfa5228/Zotero/storage/RI5D6CH5/King and Wearing - AGE STRUCTURED MODELS.pdf}
}

@article{mossongSocialContactsMixing2008a,
  title = {Social {{Contacts}} and {{Mixing Patterns Relevant}} to the {{Spread}} of {{Infectious Diseases}}},
  author = {Mossong, Joël and Hens, Niel and Jit, Mark and Beutels, Philippe and Auranen, Kari and Mikolajczyk, Rafael and Massari, Marco and Salmaso, Stefania and Tomba, Gianpaolo Scalia and Wallinga, Jacco and Heijne, Janneke and Sadkowska-Todys, Malgorzata and Rosinska, Magdalena and Edmunds, W. John},
  date = {2008-03-25},
  journaltitle = {PLOS Medicine},
  volume = {5},
  number = {3},
  pages = {e74},
  publisher = {{Public Library of Science}},
  issn = {1549-1676},
  doi = {10.1371/journal.pmed.0050074},
  url = {https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.0050074},
  urldate = {2023-06-27},
  langid = {english},
  file = {/Users/cfa5228/OneDrive/Documents/Zotero/Zotfile/Mossong et al_2008_Social Contacts and Mixing Patterns Relevant to the Spread of Infectious2.pdf},
  keywords = {Age-groups,Epidemiology,Europe,Infectious-disease-epidemiology,Infectious-diseases,Mathematical-models,Respiratory-infections,Surveys}
}