Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Padding needed when using other data to support odd number of input data #25

Open
maystroh opened this issue Apr 9, 2019 · 0 comments

Comments

@maystroh
Copy link

maystroh commented Apr 9, 2019

First of all, I would like to thank you to publish the code of the interesting study you made. I'm trying to do something similar with PPG signals so I tried your code on my data but I got an issue:

Traceback (most recent call last):
  File "ecg/train.py", line 117, in <module>
    train(args, params)
  File "ecg/train.py", line 103, in train
    callbacks=[checkpointer, reduce_lr, stopping])
  File "/usr/local/lib/python2.7/dist-packages/keras/engine/training.py", line 1039, in fit
    validation_steps=validation_steps)
  File "/usr/local/lib/python2.7/dist-packages/keras/engine/training_arrays.py", line 199, in fit_loop
    outs = f(ins_batch)
  File "/usr/local/lib/python2.7/dist-packages/keras/backend/tensorflow_backend.py", line 2715, in __call__
    return self._call(inputs)
  File "/usr/local/lib/python2.7/dist-packages/keras/backend/tensorflow_backend.py", line 2675, in _call
    fetched = self._callable_fn(*array_vals)
  File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 1439, in __call__
    run_metadata_ptr)
  File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/errors_impl.py", line 528, in __exit__
    c_api.TF_GetCode(self.status.status))
tensorflow.python.framework.errors_impl.InvalidArgumentError: Incompatible shapes: [16,15437,32] vs. [16,15438,32]
	 [[{{node add_4/add}} = Add[T=DT_FLOAT, _class=["loc:@training/Adam/gradients/add_4/add_grad/Reshape_1"], _device="/job:localhost/replica:0/task:0/device:GPU:0"](max_pooling1d_4/Squeeze, conv1d_9/add)]]
	 [[{{node loss/mul/_1985}} = _Recv[client_terminated=false, recv_device="/job:localhost/replica:0/task:0/device:CPU:0", send_device="/job:localhost/replica:0/task:0/device:GPU:0", send_device_incarnation=1, tensor_name="edge_20932_loss/mul", tensor_type=DT_FLOAT, _device="/job:localhost/replica:0/task:0/device:CPU:0"]()]]
srun: error: cn09: task 0: Exited with exit code 1

I've modified the line 62 in network.py in order to pad the inputs of the pooling layer

shortcut = MaxPooling1D(pool_size=subsample_length, padding='same')(layer)

This solved the issue.

@maystroh maystroh changed the title Padding needed when using other data to support odd number of data as input Padding needed when using other data to support odd number of input data Apr 9, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant