forked from openPMD/openPMD-api
-
Notifications
You must be signed in to change notification settings - Fork 0
335 lines (313 loc) · 11.6 KB
/
linux.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
name: 🐧 Linux
on: [push, pull_request]
concurrency:
group: ${{ github.ref }}-${{ github.head_ref }}-linux
cancel-in-progress: true
jobs:
clang7_nopy_nompi_h5_libcpp:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: clang7_nopy_nompi_h5_libcpp_v2}
- name: Install
run: |
sudo apt-get update
sudo apt-get install clang-7 libc++-7-dev libc++abi-7-dev
sudo .github/workflows/dependencies/install_spack
- name: Build
env: {CC: clang-7, CXX: clang++-7, CXXFLAGS: -stdlib=libc++ -Werror -Wno-ignored-attributes -Wno-unused-const-variable}
# -Wno-ignored-attributes -Wno-unused-const-variable: clang-6 has a
# false positive on src/auxiliary/Filesystem.cpp
# [[maybe_unused]] MPI_Datatype const MPI_Types< unsigned >::value = MPI_UNSIGNED;
run: |
eval $(spack env activate --sh .github/ci/spack-envs/clang7_nopy_nompi_h5_libcpp/)
spack install
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=OFF \
-DopenPMD_USE_MPI=OFF \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DCMAKE_VERBOSE_MAKEFILE=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
clang7_nopy_ompi_h5_ad2_libcpp:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: clang7_nopy_ompi_h5_ad2_libcpp_v2}
- name: Install
run: |
sudo apt-get update
sudo apt-get install clang-7 libc++-7-dev libc++abi-7-dev gfortran libopenmpi-dev python3
sudo .github/workflows/dependencies/install_spack
- name: Build
env: {CC: clang-7, CXX: clang++-7, CXXFLAGS: -stdlib=libc++ -Werror -Wno-ignored-attributes -Wno-unused-const-variable}
# -Wno-ignored-attributes -Wno-unused-const-variable: clang-6 has a
# false positive on src/auxiliary/Filesystem.cpp
# [[maybe_unused]] MPI_Datatype const MPI_Types< unsigned >::value = MPI_UNSIGNED;
run: |
cmake --version
mpiexec --version
perl --version
python --version
eval $(spack env activate --sh .github/ci/spack-envs/clang7_nopy_ompi_h5_ad2_libcpp/)
spack install
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=OFF \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DCMAKE_VERBOSE_MAKEFILE=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
find . -name *.bp | xargs -n1 -P1 -I {} rm -rf {}
find . -name *.bp.dir | xargs -n1 -P1 -I {} rm -rf {}
ctest --output-on-failure
clang7_nopy_ompi_h5_ad2:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: clang7_nopy_ompi_h5_ad2_v2 }
- name: Install
run: |
sudo apt-get update
sudo apt-get install clang-7 gfortran libopenmpi-dev python3
sudo .github/workflows/dependencies/install_spack
- name: Build
env: {CC: clang-7, CXX: clang++-7, CXXFLAGS: -Werror}
run: |
eval $(spack env activate --sh .github/ci/spack-envs/clang7_nopy_ompi_h5_ad2/)
spack install
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=OFF \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DCMAKE_VERBOSE_MAKEFILE=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
# TODO
# clang7_py36_nompi_h5_ad2_libstdc++
clang14_py311_nompi_h5_ad2:
runs-on: ubuntu-22.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: clang14_py311_nompi_h5_ad2_v2 }
- name: Install
run: |
sudo apt update
sudo apt install clang-14 cmake gfortran libhdf5-dev python3.11 python3.11-dev wget python3.11-venv
sudo .github/workflows/dependencies/install_spack
python3.11 -m venv /opt/python_venv
. /opt/python_venv/bin/activate
python -m pip install numpy pandas
git clone -b v4.0.3 https://github.com/ToruNiina/toml11
cmake -S toml11 -B build_toml11 \
-DCMAKE_INSTALL_PREFIX=toml11_install \
-DCMAKE_CXX_STANDARD_REQUIRED=OFF \
-DCMAKE_CXX_STANDARD=11
cmake --build build_toml11 -j 2 --target install
- name: Build
env: {CC: clang-14, CXX: clang++-14, CXXFLAGS: -Werror}
run: |
# Build Spack packages against system Python
# and activate the virtual environment just for the openPMD build.
# Spack does not play nice with venv.
eval $(spack env activate --sh .github/ci/spack-envs/clang14_py311_nompi_h5_ad2/)
spack install
. /opt/python_venv/bin/activate
share/openPMD/download_samples.sh build
export CMAKE_PREFIX_PATH="$(realpath toml11_install):$CMAKE_PREFIX_PATH"
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=OFF \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DopenPMD_USE_INTERNAL_TOML11=OFF \
-DCMAKE_VERBOSE_MAKEFILE=ON \
-DPython_EXECUTABLE="$(which python)"
cmake --build build --parallel 2
ctest --test-dir build --output-on-failure
# ADIOS2 v2.7.1
clang8_py38_mpich_h5_ad2:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: clang8_py38_mpich_h5_ad2_newLayout_v2 }
- name: Install
run: |
sudo apt-get update
sudo apt-get install clang-8 gfortran libmpich-dev python3
sudo .github/workflows/dependencies/install_spack
- name: Build
env: {CC: clang-8, CXX: clang++-8, CXXFLAGS: -Werror}
run: |
cmake --version
mpiexec --version
perl --version
python --version
eval $(spack env activate --sh .github/ci/spack-envs/clang8_py38_mpich_h5_ad2/)
spack install
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=OFF \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
# TODO: (old Travis-CI coverage)
# clang10_py38_ompi_h5_1-10-6_ad2_release
# ..._h5coll with OPENPMD_HDF5_INDEPENDENT: OFF
# TODO: (old Travis-CI coverage)
# gcc-4.9.4_nopy_nompi_h5_ad2
# gcc-4.9.4_nopy_ompi_h5_ad2
# gcc-9.3.0_nopy_nompi_h5_ad2-2.6.0
# gcc-7.4.0_nopy_ompi_h5_h5coll
# gcc-6.5.0_py35_nompi_h5-1.13.1
# gcc-8.1.0_py37_nompi_h5_static
# gcc-6.5.0_py36_nompi_h5-1.8.13
# gcc-4.8.5_py35_nompi_h5
# gcc-7.4.0_py_ompi_h5_ad2_coveralls
gcc7_py36_pd_dd_ompi_h5_ad2:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Spack Cache
uses: actions/cache@v3
with: {path: /opt/spack, key: gcc7_py36_ompi_h5_ad2_v2 }
- name: Install
run: |
sudo apt-get update
sudo apt-get install g++-7 gfortran libopenmpi-dev python3 python3-setuptools
sudo .github/workflows/dependencies/install_spack
python3 -m pip install -U pip
python3 -m pip install -U numpy
python3 -m pip install -U mpi4py
python3 -m pip install -U pandas
python3 -m pip install -U dask
python3 -m pip install -U pyarrow
- name: Build
env: {CC: gcc-7, CXX: g++-7, CXXFLAGS: -Werror}
run: |
eval $(spack env activate --sh .github/ci/spack-envs/gcc7_py36_ompi_h5_ad2/)
spack install
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
gcc9_py38_pd_nompi_h5_ad2_libcpp:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- name: Install
run: |
sudo apt-get update
sudo apt-get install g++ libopenmpi-dev libhdf5-openmpi-dev python3 python3-numpy python3-mpi4py python3-pandas
# TODO ADIOS2
- name: Build
env: {CXXFLAGS: -Werror, PKG_CONFIG_PATH: /usr/lib/x86_64-linux-gnu/pkgconfig}
run: |
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON
cmake --build build --parallel 2
cd build
ctest --output-on-failure
musllinux_py10:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
container:
image: quay.io/pypa/musllinux_1_1_x86_64
steps:
- uses: actions/checkout@v4
- name: Install
run: |
apk update
apk add hdf5-dev
# Use a virtual environment in order to avoid compatibility issues
# between the various Python installations in this image.
python3.10 -m venv /opt/python_env
. /opt/python_env/bin/activate
python -m pip install numpy
- name: Build
env: {CXXFLAGS: -Werror}
run: |
. /opt/python_env/bin/activate
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=OFF \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DPython_EXECUTABLE=$(which python)
cmake --build build --parallel 2
cd build
ctest --output-on-failure
conda_ompi_all:
runs-on: ubuntu-22.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
name: Setup conda
with:
auto-update-conda: true
activate-environment: openpmd-api-dev
environment-file: conda.yml
channels: conda-forge,defaults
channel-priority: true
- name: Build
shell: bash -eo pipefail -l {0}
env: {CXXFLAGS: -Werror}
run: |
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DCMAKE_CXX_FLAGS="-Wno-error=stringop-overread" \
-DCMAKE_C_FLAGS="-Wno-error=stringop-overread" \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DMPIEXEC_EXECUTABLE=".github/workflows/mpirun_workaround.sh"
cmake --build build --parallel 2
cd build
ctest --output-on-failure