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setup.py
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setup.py
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from setuptools import find_packages, setup
def read_requirements(filename: str):
with open(filename) as requirements_file:
import re
def fix_url_dependencies(req: str) -> str:
"""Pip and setuptools disagree about how URL dependencies should be handled."""
m = re.match(
r"^(git\+)?(https|ssh)://(git@)?github\.com/([\w-]+)/(?P<name>[\w-]+)\.git", req
)
if m is None:
return req
else:
return f"{m.group('name')} @ {req}"
requirements = []
for line in requirements_file:
line = line.strip()
if line.startswith("#") or len(line) <= 0:
continue
requirements.append(fix_url_dependencies(line))
return requirements
# version.py defines the VERSION and VERSION_SHORT variables.
# We use exec here so we don't import cached_path whilst setting up.
VERSION = {} # type: ignore
with open("vironomy/version.py", "r") as version_file:
exec(version_file.read(), VERSION)
setup(
name="vironomy",
version=VERSION["VERSION"],
description="",
long_description=open("README.md").read(),
long_description_content_type="text/markdown",
classifiers=[
"Intended Audience :: Science/Research",
"Development Status :: 3 - Alpha",
"License :: OSI Approved :: MIT Software License",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Viral phylogenetics",
],
keywords="",
url="https://github.com/b-tierney/vironomy",
author="Braden Tierney",
author_email="braden.tierney@gmail.com",
license="MIT",
scripts = ['vironomy/vironomy'],
packages=find_packages(
exclude=["*.tests", "*.tests.*", "tests.*", "tests"],
),
package_data={"vironomy": ["py.typed"]},
install_requires=read_requirements("requirements.txt"),
extras_require={"dev": read_requirements("dev-requirements.txt")},
python_requires=">=3.7",
)