Skip to content

Commit a9f0bf1

Browse files
chapmanbchapmanb
committed
Initial migration of bcbio to GitHub pages
- Contains posts exported from Blue Collar Bioinformatics - Updates tags to provide better content organization - New front page with details about open-source, community development and bcbio goals - Still needs cleanup and organization before moving to main site
0 parents  commit a9f0bf1

File tree

341 files changed

+41310
-0
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

341 files changed

+41310
-0
lines changed

‎.gitignore

Lines changed: 8 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,8 @@
1+
_site
2+
.DS_Store
3+
*.sublime-project
4+
*.sublime-workspace
5+
codekit-config.json
6+
node_modules
7+
.sass-cache
8+
Gemfile.lock

‎404.md

Lines changed: 18 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,18 @@
1+
---
2+
layout: page
3+
title: "Page Not Found"
4+
description: "Page not found. Your pixels are in another canvas."
5+
sitemap: false
6+
search_omit: true
7+
permalink: /404.html
8+
---
9+
10+
Sorry, but the page you were trying to view does not exist --- perhaps you can try searching for it below.
11+
12+
<script type="text/javascript">
13+
var GOOG_FIXURL_LANG = 'en';
14+
var GOOG_FIXURL_SITE = '{{ site.url }}'
15+
</script>
16+
<script type="text/javascript"
17+
src="//linkhelp.clients.google.com/tbproxy/lh/wm/fixurl.js">
18+
</script>

‎Gemfile

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
source 'https://rubygems.org'
2+
3+
gem 'jekyll'
4+
gem 'jekyll-sitemap'
5+
gem 'octopress', '~> 3.0.0.rc.12'
6+
gem 'rouge'

‎Gruntfile.js

Lines changed: 84 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,84 @@
1+
'use strict';
2+
module.exports = function(grunt) {
3+
4+
grunt.initConfig({
5+
jshint: {
6+
options: {
7+
jshintrc: '.jshintrc'
8+
},
9+
all: [
10+
'Gruntfile.js',
11+
'assets/js/*.js',
12+
'assets/js/plugins/*.js',
13+
'!assets/js/scripts.min.js'
14+
]
15+
},
16+
uglify: {
17+
dist: {
18+
files: {
19+
'assets/js/scripts.min.js': [
20+
'assets/js/plugins/*.js',
21+
'assets/js/_*.js'
22+
]
23+
}
24+
}
25+
},
26+
imagemin: {
27+
dist: {
28+
options: {
29+
optimizationLevel: 7,
30+
progressive: true
31+
},
32+
files: [{
33+
expand: true,
34+
cwd: 'images/',
35+
src: '{,*/}*.{png,jpg,jpeg}',
36+
dest: 'images/'
37+
}]
38+
}
39+
},
40+
svgmin: {
41+
dist: {
42+
files: [{
43+
expand: true,
44+
cwd: 'images/',
45+
src: '{,*/}*.svg',
46+
dest: 'images/'
47+
}]
48+
}
49+
},
50+
watch: {
51+
js: {
52+
files: [
53+
'<%= jshint.all %>'
54+
],
55+
tasks: ['uglify']
56+
}
57+
},
58+
clean: {
59+
dist: [
60+
'assets/js/scripts.min.js'
61+
]
62+
}
63+
});
64+
65+
// Load tasks
66+
grunt.loadNpmTasks('grunt-contrib-clean');
67+
grunt.loadNpmTasks('grunt-contrib-jshint');
68+
grunt.loadNpmTasks('grunt-contrib-uglify');
69+
grunt.loadNpmTasks('grunt-contrib-watch');
70+
grunt.loadNpmTasks('grunt-contrib-imagemin');
71+
grunt.loadNpmTasks('grunt-svgmin');
72+
73+
// Register tasks
74+
grunt.registerTask('default', [
75+
'clean',
76+
'uglify',
77+
'imagemin',
78+
'svgmin'
79+
]);
80+
grunt.registerTask('dev', [
81+
'watch'
82+
]);
83+
84+
};

‎README.md

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,5 @@
1+
## Blue Collar Bioinfomatics
2+
3+
The website for [Blue Collar Bioinformatics](http://bcb.io), running on
4+
[GitHub pages](https://pages.github.com/) using [Jekyll](http://jekyllrb.com/)
5+
with the [So Simple Theme](http://mmistakes.github.io/so-simple-theme/).

‎_attachments/2009-01-24-pos_neg_hist.html

Lines changed: 20 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,20 @@
1+
---
2+
layout: attachment
3+
title: Example histogram
4+
date: 2009-01-24 13:28:01.000000000 -05:00
5+
categories: []
6+
tags: []
7+
status: inherit
8+
type: attachment
9+
published: false
10+
meta: {}
11+
author:
12+
login: bcbio
13+
email: chapmanb@50mail.com
14+
display_name: Brad Chapman
15+
first_name: ''
16+
last_name: ''
17+
excerpt: !ruby/object:Hpricot::Doc
18+
options: {}
19+
---
20+

‎_attachments/2009-02-07-baa36600_1_conservation.html

Lines changed: 20 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,20 @@
1+
---
2+
layout: attachment
3+
title: baa36600_1_conservation
4+
date: 2009-02-07 17:20:50.000000000 -05:00
5+
categories: []
6+
tags: []
7+
status: inherit
8+
type: attachment
9+
published: false
10+
meta: {}
11+
author:
12+
login: bcbio
13+
email: chapmanb@50mail.com
14+
display_name: Brad Chapman
15+
first_name: ''
16+
last_name: ''
17+
excerpt: !ruby/object:Hpricot::Doc
18+
options: {}
19+
---
20+

‎_attachments/2009-04-29-5_5429173_5429347-freq.html

Lines changed: 20 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,20 @@
1+
---
2+
layout: attachment
3+
title: 5_5429173_5429347-freq
4+
date: 2009-04-29 16:56:40.000000000 -04:00
5+
categories: []
6+
tags: []
7+
status: inherit
8+
type: attachment
9+
published: false
10+
meta: {}
11+
author:
12+
login: bcbio
13+
email: chapmanb@50mail.com
14+
display_name: Brad Chapman
15+
first_name: ''
16+
last_name: ''
17+
excerpt: !ruby/object:Hpricot::Doc
18+
options: {}
19+
---
20+

‎_attachments/2010-03-05-request_samples.html

Lines changed: 20 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,20 @@
1+
---
2+
layout: attachment
3+
title: request_samples
4+
date: 2010-03-05 14:08:31.000000000 -05:00
5+
categories: []
6+
tags: []
7+
status: inherit
8+
type: attachment
9+
published: false
10+
meta: {}
11+
author:
12+
login: bcbio
13+
email: chapmanb@50mail.com
14+
display_name: Brad Chapman
15+
first_name: ''
16+
last_name: ''
17+
excerpt: !ruby/object:Hpricot::Doc
18+
options: {}
19+
---
20+

‎_attachments/2011-01-10-data_library_results.html

Lines changed: 20 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,20 @@
1+
---
2+
layout: attachment
3+
title: data_library_results
4+
date: 2011-01-10 12:30:10.000000000 -05:00
5+
categories: []
6+
tags: []
7+
status: inherit
8+
type: attachment
9+
published: false
10+
meta: {}
11+
author:
12+
login: bcbio
13+
email: chapmanb@50mail.com
14+
display_name: Brad Chapman
15+
first_name: ''
16+
last_name: ''
17+
excerpt: !ruby/object:Hpricot::Doc
18+
options: {}
19+
---
20+

0 commit comments

Comments
 (0)