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When using a group grey matter template, it's possible that the mask cover voxels with no signal for a subject. In that case, the inverse transform function of NiftiMasker will fail.
fill NaN values in with zeros so when reconstructing the nifti, the voxel will be treated as background.
Skip this subject and keep with workflow running - if going for this option, this should also apply to other known issues (cosine and compcor labelling related issues)
The text was updated successfully, but these errors were encountered:
When using a group grey matter template, it's possible that the mask cover voxels with no signal for a subject. In that case, the inverse transform function of NiftiMasker will fail.
https://github.com/SIMEXP/giga_connectome/blob/916e15533c59e8e8bf2e5cd54077b7ea677d2e52/giga_connectome/denoise.py#L133
Two potential solutions:
NaN
values in with zeros so when reconstructing the nifti, the voxel will be treated as background.The text was updated successfully, but these errors were encountered: