samples_dump.json

[{"pk": 1, "model": "samples.genome", "fields": {"dbxref": "TriTrypDB", "strain": "Friedlin", "isolate": "FV1", "source": "NA", "reference_code": "LmjF", "genus": "Leishmania", "species": "major"}}, {"pk": 2, "model": "samples.genome", "fields": {"dbxref": "WTSI", "strain": "BPK", "isolate": "Indian Isolate", "source": "NA", "reference_code": "LdoB", "genus": "Leishmania", "species": "donovani"}}, {"pk": 3, "model": "samples.genome", "fields": {"dbxref": "TriTrypDB", "strain": "J", "isolate": "NA", "source": "NA", "reference_code": "LinJ", "genus": "Leishmania", "species": "infantum"}}, {"pk": 4, "model": "samples.genome", "fields": {"dbxref": "WUSTL-SBRI", "strain": "MHOM/BR/75/M2903", "isolate": "NA", "source": "NA", "reference_code": "LbrM2903", "genus": "Leishmania", "species": "braziliensis"}}, {"pk": 5, "model": "samples.genome", "fields": {"dbxref": "TriTrypDB", "strain": "MHOM/BR/75/M2904", "isolate": "NA", "source": "NA", "reference_code": "LbrM2904", "genus": "Leishmania", "species": "braziliensis"}}, {"pk": 6, "model": "samples.genome", "fields": {"dbxref": "TritypDB", "strain": "", "isolate": "", "source": "", "reference_code": "Ltar", "genus": "Leishmania", "species": "tarentolae"}}, {"pk": 7, "model": "samples.genome", "fields": {"dbxref": "TriTrypDB V4.2", "strain": "MHOMGT2001U1103", "isolate": "", "source": "", "reference_code": "LmxM", "genus": "Leishmania", "species": "mexicana"}}, {"pk": 8, "model": "samples.genome", "fields": {"dbxref": "TREU927", "strain": "", "isolate": "", "source": "", "reference_code": "Tbrucei", "genus": "Trypanosoma", "species": "brucei"}}, {"pk": 9, "model": "samples.genome", "fields": {"dbxref": "Crithidia fasciculata", "strain": "Cf-Cl", "isolate": "", "source": "", "reference_code": "Cfas", "genus": "Crithidia", "species": "fasciculata"}}, {"pk": 11, "model": "samples.genome", "fields": {"dbxref": "TriTrypDB", "strain": "Parrot", "isolate": "", "source": "", "reference_code": "LtaP", "genus": "Leishmania", "species": "torentalae"}}, {"pk": 1, "model": "samples.bioproject", "fields": {"bioproject_code": "UN_ASSIGNED", "notes": "A dummy place holder until a bioproject is available", "sharepoint_projectcode": "UN_ASSIGNED", "organisms": "UN_ASSIGNED"}}, {"pk": 1, "model": "samples.biosample", "fields": {"notes": "A dummy place holder until a biosample is available", "collected_on_test": "2014-03-25", "organisms": "UN_ASSIGNED", "biosample_code": "UN_ASSIGNED"}}, {"pk": 2, "model": "samples.protocol", "fields": {"protocol_file": "", "protocol_link": "", "protocol_name": "test02", "notes": "test02"}}, {"pk": 5, "model": "samples.protocol", "fields": {"protocol_file": "protocols/Leishmania_NGS_SL_new.docx", "protocol_link": "https://portal.sbri.org/sites/myler/Lab%20Protocols/Forms/AllItems.aspx?RootFolder=%2Fsites%2Fmyler%2FLab%20Protocols%2FNGS%20protocols%2FSL%20RNA%2Dseq&InitialTabId=Ribbon%2EDocument&VisibilityContext=WSSTabPersistence", "protocol_name": "Leishmania NGS SL New", "notes": "Used Gene read size selection kit for purification of final product"}}, {"pk": 6, "model": "samples.protocol", "fields": {"protocol_file": "", "protocol_link": "", "protocol_name": "SL_classic_02", "notes": "Get it from Andrew"}}, {"pk": 7, "model": "samples.protocol", "fields": {"protocol_file": "", "protocol_link": "", "protocol_name": "Covance gDNA protocol", "notes": "Covance uses the standard illumina gDNA protocol"}}, {"pk": 8, "model": "samples.protocol", "fields": {"protocol_file": "", "protocol_link": "", "protocol_name": "UW_RNAseq_withPolyApurification", "notes": "SBRI submits total RNA samples to UW. UW HTseq then does a polyA purification and prepare the RNAseq libraries based on standard RNAseq protocol from illumina"}}