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Experimental mass to charge is missing in DIA output report #202

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WangHong007 opened this issue Jun 24, 2022 · 1 comment · Fixed by #205
Closed

Experimental mass to charge is missing in DIA output report #202

WangHong007 opened this issue Jun 24, 2022 · 1 comment · Fixed by #205
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@WangHong007
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Description of the bug

The current DIA-NN used by the pipeline is v1.8.1, DIA output lacks experimental mass to charge, and the corresponding column in DIA-NN v1.8 is "precursor.mz". This deficiency will affect the generation of QC reports.

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@WangHong007 WangHong007 added the bug Something isn't working label Jun 24, 2022
@vdemichev
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A comment: experimental mass to charge might be missing in DIA data (no MS1 signal detected). In fact, DIA data sometimes does not have MS1 at all.

@ypriverol ypriverol linked a pull request Aug 3, 2022 that will close this issue
enable mzTab for DIA-NN #205
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enable mzTab for DIA-NN
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@vdemichev @WangHong007