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In the identification workflow we are exporting parquet files with csv extension #408

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ypriverol opened this issue Aug 16, 2024 · 0 comments · Fixed by #409
Closed

In the identification workflow we are exporting parquet files with csv extension #408

ypriverol opened this issue Aug 16, 2024 · 0 comments · Fixed by #409
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Description of the bug

Here:

quantms/modules/local/extract_psm/main.nf

Line 26 in 8cf493b

quantmsutilsc psmconvert --idxml "${idxml_file}" \\

we are exporting csv but internally quantmsutils is exporting to parquet.

Command used and terminal output

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@ypriverol ypriverol added the bug Something isn't working label Aug 16, 2024
@ypriverol ypriverol self-assigned this Aug 16, 2024
@ypriverol ypriverol mentioned this issue Aug 16, 2024
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@ypriverol ypriverol linked a pull request Aug 16, 2024 that will close this issue
quantms-utils 0.0.8 -> 0.0.9 #409
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quantms-utils 0.0.8 -> 0.0.9 ypriverol/quantms
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@ypriverol