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feat: ngs_mapping cleanup, versions bump (#278) #280

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merged 2 commits into from
Dec 20, 2022
Merged

feat: ngs_mapping cleanup, versions bump (#278) #280

merged 2 commits into from
Dec 20, 2022

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holtgrewe
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@holtgrewe holtgrewe commented Dec 20, 2022 •
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Refurbishing the ngs_maping step. Includes version bumps, more
consistent creation of log files. Removed picard hybrid capture
statistics and ngmlr steps.

@holtgrewe holtgrewe linked an issue Dec 20, 2022 that may be closed by this pull request
Bumping versions in ngs-mapping (#278) #278
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  • Please format your Python code with black: make black
  • Please format your Snakemake code with snakefmt: make snakefmt
  • Please organize your imports isorts: make isort
  • Please ensure that your code passes flake8: make flake8

You can trigger all lints locally by running make lint

@holtgrewe holtgrewe changed the title Bumping versions in ngs-mapping (#278) feat: ngs_mapping cleanup, versions bump (#278) Dec 20, 2022
@holtgrewe holtgrewe marked this pull request as ready for review December 20, 2022 16:05
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Coverage Status

Coverage increased (+0.07%) to 89.058% when pulling 6fde9d5 on 278-bump-versions-in-ngs_mapping into 174c413 on main.

@holtgrewe holtgrewe merged commit af8e21f into main Dec 20, 2022
@holtgrewe holtgrewe deleted the 278-bump-versions-in-ngs_mapping branch December 20, 2022 16:10
@tedil tedil mentioned this pull request Jun 28, 2024
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Successfully merging this pull request may close these issues.

Bumping versions in ngs-mapping (#278)
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