You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Downloading ftp://greengenes.microbio.me/greengenes_release/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
Downloading file of size: 9.61 MB
9.61 MB 100.01 % 1.20 MB/sec 0 min -0 sec
Traceback (most recent call last):
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/bin/biobakery_workflows_databases", line 11, in
sys.exit(main())
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 244, in main
run_command(["download_picrust_files.py"])
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 73, in run_command
id=subprocess.check_call(command, shell=shell)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 358, in check_call
retcode = call(*popenargs, **kwargs)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 339, in call
with Popen(*popenargs, **kwargs) as p:
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 800, in init
restore_signals, start_new_session)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 1551, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'download_picrust_files.py': 'download_picrust_files.py'
The text was updated successfully, but these errors were encountered:
(biobakery_workflows) lizhihua@lizhihua-S2600CP:
$ biobakery_workflows --versionbiobakery_workflows v3.0.0-alpha.4$ kneaddata --version(biobakery_workflows) lizhihua@lizhihua-S2600CP:
kneaddata v0.7.4
(biobakery_workflows) lizhihua@lizhihua-S2600CP:~$ biobakery_workflows_databases --install 16s_usearch
Downloading green genes database files
Downloading ftp://greengenes.microbio.me/greengenes_release/gg_13_8_otus/rep_set/97_otus.fasta
Downloading file of size: 136.58 MB
136.59 MB 100.00 % 3.75 MB/sec 0 min -0 sec
Downloading ftp://greengenes.microbio.me/greengenes_release/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
Downloading file of size: 9.61 MB
9.61 MB 100.01 % 1.20 MB/sec 0 min -0 sec
Traceback (most recent call last):
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/bin/biobakery_workflows_databases", line 11, in
sys.exit(main())
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 244, in main
run_command(["download_picrust_files.py"])
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 73, in run_command
id=subprocess.check_call(command, shell=shell)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 358, in check_call
retcode = call(*popenargs, **kwargs)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 339, in call
with Popen(*popenargs, **kwargs) as p:
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 800, in init
restore_signals, start_new_session)
File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 1551, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'download_picrust_files.py': 'download_picrust_files.py'
The text was updated successfully, but these errors were encountered: