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Error installing #34

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imonteroo opened this issue Dec 19, 2023 · 1 comment
Closed

Error installing #34

imonteroo opened this issue Dec 19, 2023 · 1 comment

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@imonteroo
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I'm installing biobakery workflows in a conda environment

I started well

conda create --name biobakery conda activate biobakery conda install -c biobakery biobakery_workflows conda install -c biobakery leveldb

but when I tryed to install databases, errors appeared.

biobakery_workflows_databases --install wmgx --location /media/microviable/e/bwfdb/ Installing humann utility mapping database Download URL: http://huttenhower.sph.harvard.edu/humann_data/full_mapping_v201901b.tar.gz CRITICAL ERROR: Unable to download and extract from URL: http://huttenhower.sph.harvard.edu/humann_data/full_mapping_v201901b.tar.gz WARNING: Unable to install database. Error running command: humann_databases --download utility_mapping full /media/microviable/e/bwfdb/humann Unable to find strainphlan install.

Any idea?

Thankyou

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Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.

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