Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support RefSeq namespaces for searching #38

Closed
reece opened this issue Oct 20, 2018 · 0 comments
Closed

Support RefSeq namespaces for searching #38

reece opened this issue Oct 20, 2018 · 0 comments
Assignees

Comments

@reece
Copy link
Member

reece commented Oct 20, 2018

SeqRepo currently uses NCBI as the namespace for what should be called RefSeq. We currently have NCBI in use in other biocommons packages, but that should not be further entrenched. To enable developers to use the proper RefSeq namespace, manually translate "RefSeq" to "NCBI" when finding accessions (i.e., SeqAliasDB::find_aliases()).

This action is a stop-gap until we address #31.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant