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build_failure.linux-64.yaml
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build_failure.linux-64.yaml
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recipe_sha: dfee820d3eae3aab71166f39ec660221bcc5c682aab2c56017431f684c72374d # The commit at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |2-
| ^~~~~~
h/Types.h:207:22: error: variable 'const std::array<char, 16> nu2asc' has initializer but incomplete type
207 | const array<char,16> nu2asc = {
| ^~~~~~
h/Types.h:216:22: error: variable 'const std::array<bool, 16> nu2ambig' has initializer but incomplete type
216 | const array<bool,16> nu2ambig = {
| ^~~~~~~~
h/Types.h:226:24: error: variable 'const std::array<unsigned char, 16> nu2pre' has initializer but incomplete type
226 | const array<Symbol,16> nu2pre = {
| ^~~~~~
h/Types.h:239:24: error: variable 'const std::array<unsigned char, 16> nu2compl' has initializer but incomplete type
239 | const array<Symbol,16> nu2compl = {
| ^~~~~~~~
h/Types.h:252:23: error: variable 'const std::array<bool, 256> nunu2compl' has initializer but incomplete type
252 | const array<bool,256> nunu2compl = {
| ^~~~~~~~~~
h/Types.h:287:23: error: variable 'const std::array<bool, 256> nunu2at' has initializer but incomplete type
287 | const array<bool,256> nunu2at = {
| ^~~~~~~
h/Types.h:321:23: error: variable 'const std::array<unsigned char, 4> pre2nu' has initializer but incomplete type
321 | const array<Symbol,4> pre2nu = {
| ^~~~~~
In file included from h/Source.h:20:
h/Fragment.h: In constructor 'Fragment::Fragment(const std::string&, const Cover<unsigned int>&, Length, bool)':
h/Fragment.h:26:24: warning: member 'Fragment::ambig' is used uninitialized [-Wuninitialized]
26 | start( ambig.range().lo()), file_name( fn ), ambig( a ), ambig_plus( a ), ambig_compl( -a ), cover_range() {
| ^~~~~
h/Source.h: In member function 'void Source::printExcluded(const std::string&)':
h/Source.h:156:43: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=]
156 | }catch( ios_base::failure f ){
| ^
$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -c -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aodp-2.5.0.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wall -Wno-write-strings -o o/newick.y.o ly/newick.y.cpp -Ih -Ily
main/aodp.cpp: In function 'int main(int, char**)':
main/aodp.cpp:10:22: warning: catching polymorphic type 'class Error' by value [-Wcatch-value=]
10 | }catch(Error e){
| ^
In file included from h/Source.h:17,
from ly/newick.y:8:
h/Types.h:185:25: error: variable 'const std::array<unsigned char, 128> asc2nu' has initializer but incomplete type
185 | const array<Symbol,128> asc2nu = {
| ^~~~~~
h/Types.h:207:22: error: variable 'const std::array<char, 16> nu2asc' has initializer but incomplete type
207 | const array<char,16> nu2asc = {
| ^~~~~~
h/Types.h:216:22: error: variable 'const std::array<bool, 16> nu2ambig' has initializer but incomplete type
216 | const array<bool,16> nu2ambig = {
| ^~~~~~~~
h/Types.h:226:24: error: variable 'const std::array<unsigned char, 16> nu2pre' has initializer but incomplete type
226 | const array<Symbol,16> nu2pre = {
| ^~~~~~
h/Types.h:239:24: error: variable 'const std::array<unsigned char, 16> nu2compl' has initializer but incomplete type
239 | const array<Symbol,16> nu2compl = {
| ^~~~~~~~
h/Types.h:252:23: error: variable 'const std::array<bool, 256> nunu2compl' has initializer but incomplete type
252 | const array<bool,256> nunu2compl = {
| ^~~~~~~~~~
h/Types.h:287:23: error: variable 'const std::array<bool, 256> nunu2at' has initializer but incomplete type
287 | const array<bool,256> nunu2at = {
| ^~~~~~~
h/Types.h:321:23: error: variable 'const std::array<unsigned char, 4> pre2nu' has initializer but incomplete type
321 | const array<Symbol,4> pre2nu = {
| ^~~~~~
In file included from h/Source.h:20:
h/Fragment.h: In constructor 'Fragment::Fragment(const std::string&, const Cover<unsigned int>&, Length, bool)':
h/Fragment.h:26:24: warning: member 'Fragment::ambig' is used uninitialized [-Wuninitialized]
26 | start( ambig.range().lo()), file_name( fn ), ambig( a ), ambig_plus( a ), ambig_compl( -a ), cover_range() {
| ^~~~~
h/Types.h: At global scope:
h/Types.h:321:23: warning: 'pre2nu' defined but not used [-Wunused-variable]
321 | const array<Symbol,4> pre2nu = {
| ^~~~~~
make: *** [Makefile:116: o/aodp.m.o] Error 1
make: *** Waiting for unfinished jobs....
h/Source.h: In member function 'void Source::printExcluded(const std::string&)':
h/Source.h:156:43: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=]
156 | }catch( ios_base::failure f ){
| ^
h/Types.h: At global scope:
h/Types.h:321:23: warning: 'pre2nu' defined but not used [-Wunused-variable]
321 | const array<Symbol,4> pre2nu = {
| ^~~~~~
make: *** [Makefile:119: o/newick.y.o] Error 1
Traceback (most recent call last):
File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
call_conda_build(action, config)
File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
result = api.build(
File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
return build_tree(
File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
packages_from_this = build(metadata, stats,
File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/aodp_1685386261398/work/conda_build.sh']' returned non-zero exit status 2.
# Last 100 lines of the build log.