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build_failure.osx-64.yaml
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build_failure.osx-64.yaml
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recipe_sha: ead9f20290840b76f8debd8ec990605d4baefb8e6c9089d0f0592ddcb807e951 # The commit at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/libs/pll-modules/src/tree/tbe_functions.c:400:32: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (abs(bs_light[j] - p) > min_hdist &&
~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~
4 warnings generated.
[ 66%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o
[ 67%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/split_utree.c.o
[ 68%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/lex_split.c.o
[ 68%] Built target pllmodtree_obj
[ 69%] Linking C static library libpllmodtree.a
[ 69%] Built target pllmodtree_static
[ 70%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/__/pllmod_common.c.o
[ 70%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models.c.o
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/libs/pll-modules/src/util/models.c:396:37: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
assert(PLL_STATE_POPCNT(gapstate) == states);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/assert.h:93:25: note: expanded from macro 'assert'
(__builtin_expect(!(e), 0) ? __assert_rtn(__func__, __FILE__, __LINE__, #e) : (void)0)
^
1 warning generated.
[ 71%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_aa.c.o
[ 72%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_dna.c.o
[ 73%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_gt.c.o
[ 74%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_mult.c.o
[ 74%] Built target pllmodutil_obj
[ 75%] Linking C static library libpllmodutil.a
[ 75%] Built target pllmodutil_static
[ 75%] Building CXX object src/CMakeFiles/modeltest_module.dir/genesis/date_time.cpp.o
[ 76%] Building CXX object src/CMakeFiles/modeltest_module.dir/genesis/logging.cpp.o
[ 77%] Building CXX object src/CMakeFiles/modeltest_module.dir/genesis/string.cpp.o
[ 78%] Building CXX object src/CMakeFiles/modeltest_module.dir/main.cpp.o
[ 79%] Building CXX object src/CMakeFiles/modeltest_module.dir/meta.cpp.o
[ 79%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/abstract_parameter.cpp.o
[ 80%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/dnamodel.cpp.o
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/model/dnamodel.cpp:204:52: warning: operator '?:' has lower precedence than '|'; '|' will be evaluated first [-Wbitwise-conditional-parentheses]
optimize_gamma | optimize_ratecats ? n_categories : 1, /* rate cats */
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/model/dnamodel.cpp:204:52: note: place parentheses around the '|' expression to silence this warning
optimize_gamma | optimize_ratecats ? n_categories : 1, /* rate cats */
^
( )
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/model/dnamodel.cpp:204:52: note: place parentheses around the '?:' expression to evaluate it first
optimize_gamma | optimize_ratecats ? n_categories : 1, /* rate cats */
^
( )
1 warning generated.
[ 81%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/model.cpp.o
[ 82%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_branches.cpp.o
[ 83%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_frequencies.cpp.o
[ 84%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_gamma.cpp.o
[ 84%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_pinv.cpp.o
[ 85%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_ratecats.cpp.o
[ 86%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/parameter_substrates.cpp.o
[ 87%] Building CXX object src/CMakeFiles/modeltest_module.dir/model/protmodel.cpp.o
[ 88%] Building CXX object src/CMakeFiles/modeltest_module.dir/model_selection.cpp.o
[ 88%] Building CXX object src/CMakeFiles/modeltest_module.dir/modeltest.cpp.o
[ 89%] Building CXX object src/CMakeFiles/modeltest_module.dir/msapll.cpp.o
[ 90%] Building CXX object src/CMakeFiles/modeltest_module.dir/optimize/model_optimizer_pll.cpp.o
[ 91%] Building CXX object src/CMakeFiles/modeltest_module.dir/optimize/partition_optimizer.cpp.o
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/optimize/partition_optimizer.cpp:251:15: warning: variable 'opt_models_count' set but not used [-Wunused-but-set-variable]
mt_size_t opt_models_count = 0;
^
1 warning generated.
[ 92%] Building CXX object src/CMakeFiles/modeltest_module.dir/partition.cpp.o
[ 93%] Building CXX object src/CMakeFiles/modeltest_module.dir/partition_selection.cpp.o
[ 93%] Building CXX object src/CMakeFiles/modeltest_module.dir/partitioning_scheme.cpp.o
[ 94%] Building CXX object src/CMakeFiles/modeltest_module.dir/service/checkpoint.cpp.o
[ 95%] Building CXX object src/CMakeFiles/modeltest_module.dir/service/modeltestservice.cpp.o
[ 96%] Building CXX object src/CMakeFiles/modeltest_module.dir/static_analyzer.cpp.o
[ 97%] Building CXX object src/CMakeFiles/modeltest_module.dir/thread/observer.cpp.o
[ 97%] Building CXX object src/CMakeFiles/modeltest_module.dir/thread/parallel_context.cpp.o
[ 98%] Building CXX object src/CMakeFiles/modeltest_module.dir/treepll.cpp.o
[ 99%] Building CXX object src/CMakeFiles/modeltest_module.dir/utils.cpp.o
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/utils.cpp:949:44: error: expected ')' in preprocessor expression
#if defined(CTL_HW) && (defined(HW_MEMSIZE)
~~~~~~~~~~~~~~~~~~~^
/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/src/utils.cpp:949:24: note: to match this '('
#if defined(CTL_HW) && (defined(HW_MEMSIZE)
^
1 error generated.
make[2]: *** [src/CMakeFiles/modeltest_module.dir/build.make:482: src/CMakeFiles/modeltest_module.dir/utils.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:674: src/CMakeFiles/modeltest_module.dir/all] Error 2
make: *** [Makefile:91: all] Error 2
Traceback (most recent call last):
File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
sys.exit(main())
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
call_conda_build(action, config)
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
result = api.build(
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
return build_tree(
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
packages_from_this = build(metadata, stats,
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/modeltest-ng_1685393044934/work/conda_build.sh']' returned non-zero exit status 2.
# Last 100 lines of the build log.