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build_failure.osx-64.yaml
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build_failure.osx-64.yaml
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recipe_sha: cd4c86534ca7008c3d495966fb1c51b40807a4137e8ec1f32783f4da9d306ecb # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |2-
libzlib: 1.2.13-h87427d6_6 conda-forge
llvm-openmp: 15.0.7-h61d9ccf_0 conda-forge
lxml: 5.2.2-py310h27134ca_0 conda-forge
lz4-c: 1.9.4-hf0c8a7f_0 conda-forge
markdown-it-py: 3.0.0-pyhd8ed1ab_0 conda-forge
markupsafe: 2.1.5-py310hb372a2b_0 conda-forge
matplotlib-base: 3.8.4-py310h7ea1ff3_2 conda-forge
mdurl: 0.1.2-pyhd8ed1ab_0 conda-forge
ms2pip: 4.0.0.dev8-py310hc6dee1f_1 local
munkres: 1.1.4-pyh9f0ad1d_0 conda-forge
mysql-common: 8.3.0-hfd7a639_4 conda-forge
mysql-libs: 8.3.0-ha9146f8_4 conda-forge
ncurses: 6.5-h5846eda_0 conda-forge
nspr: 4.35-hea0b92c_0 conda-forge
nss: 3.100-h6606ded_0 conda-forge
numexpr: 2.10.0-py310hbf2a7f0_0 conda-forge
numpy: 1.23.5-py310h1b7c290_0 conda-forge
openjpeg: 2.5.2-h7310d3a_0 conda-forge
openssl: 3.3.1-h87427d6_0 conda-forge
orc: 2.0.1-hf43e91b_1 conda-forge
packaging: 24.0-pyhd8ed1ab_0 conda-forge
pandas: 2.2.2-py310hbf2a7f0_1 conda-forge
pcre2: 10.43-h0ad2156_0 conda-forge
pillow: 10.3.0-py310h99295b8_0 conda-forge
psims: 1.3.3-pyhdfd78af_0 bioconda
psm-utils: 0.9.0-pyhdfd78af_0 bioconda
pthread-stubs: 0.4-hc929b4f_1001 conda-forge
py-cpuinfo: 9.0.0-pyhd8ed1ab_0 conda-forge
py-xgboost: 1.7.6-cpu_py310h84be057_2 conda-forge
pyarrow: 16.1.0-py310h1cef2ca_1 conda-forge
pyarrow-core: 16.1.0-py310h907dfef_1_cpu conda-forge
pydantic: 1.10.14-py310hb372a2b_0 conda-forge
pygments: 2.18.0-pyhd8ed1ab_0 conda-forge
pyopenms: 2.9.1-py310hdc5ccfa_3 bioconda
pyparsing: 3.1.2-pyhd8ed1ab_0 conda-forge
pytables: 3.8.0-py310hd1bf580_2 conda-forge
pyteomics: 4.6.3-pyh7cba7a3_0 bioconda
python: 3.10.14-h00d2728_0_cpython conda-forge
python-dateutil: 2.9.0-pyhd8ed1ab_0 conda-forge
python-tzdata: 2024.1-pyhd8ed1ab_0 conda-forge
python_abi: 3.10-4_cp310 conda-forge
pytz: 2024.1-pyhd8ed1ab_0 conda-forge
qt-main: 5.15.8-hecaf5c3_21 conda-forge
re2: 2023.09.01-hb168e87_2 conda-forge
readline: 8.2-h9e318b2_1 conda-forge
rich: 13.7.1-pyhd8ed1ab_0 conda-forge
scikit-learn: 1.3.1-py310h9d3367e_0 conda-forge
scipy: 1.13.1-py310h35d8cac_0 conda-forge
setuptools: 70.0.0-pyhd8ed1ab_0 conda-forge
six: 1.16.0-pyh6c4a22f_0 conda-forge
snappy: 1.2.0-h6dc393e_1 conda-forge
sqlalchemy: 2.0.30-py310h56a41de_0 conda-forge
threadpoolctl: 3.5.0-pyhc1e730c_0 conda-forge
tk: 8.6.13-h1abcd95_1 conda-forge
tomlkit: 0.12.5-pyha770c72_0 conda-forge
tqdm: 4.66.4-pyhd8ed1ab_0 conda-forge
typing-extensions: 4.12.2-hd8ed1ab_0 conda-forge
typing_extensions: 4.12.2-pyha770c72_0 conda-forge
tzdata: 2024a-h0c530f3_0 conda-forge
unicodedata2: 15.1.0-py310h6729b98_0 conda-forge
werkzeug: 3.0.3-pyhd8ed1ab_0 conda-forge
xerces-c: 3.2.5-hbbe9ea5_0 conda-forge
xgboost: 1.7.6-cpu_py310h84be057_2 conda-forge
xorg-libxau: 1.0.11-h0dc2134_0 conda-forge
xorg-libxdmcp: 1.1.3-h35c211d_0 conda-forge
xz: 5.2.6-h775f41a_0 conda-forge
zlib: 1.2.13-h87427d6_6 conda-forge
zlib-ng: 2.0.7-hb7f2c08_0 conda-forge
zstd: 1.5.6-h915ae27_0 conda-forge
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Traceback (most recent call last):
File "/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/test_tmp/run_test.py", line 2, in <module>
import ms2pip
File "/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.10/site-packages/ms2pip/__init__.py", line 13, in <module>
from ms2pip.core import ( # noqa: F401 E402
File "/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.10/site-packages/ms2pip/core.py", line 16, in <module>
from psm_utils import PSM, Peptidoform, PSMList
File "/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.10/site-packages/psm_utils/__init__.py", line 17, in <module>
from psm_utils.psm import PSM # noqa: E402
File "/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.10/site-packages/psm_utils/psm.py", line 10, in <module>
class PSM(BaseModel):
File "pydantic/main.py", line 197, in pydantic.main.ModelMetaclass.__new__
File "pydantic/fields.py", line 504, in pydantic.fields.ModelField.infer
File "pydantic/fields.py", line 434, in pydantic.fields.ModelField.__init__
File "pydantic/fields.py", line 550, in pydantic.fields.ModelField.prepare
File "pydantic/fields.py", line 661, in pydantic.fields.ModelField._type_analysis
File "pydantic/fields.py", line 806, in pydantic.fields.ModelField._create_sub_type
File "pydantic/fields.py", line 434, in pydantic.fields.ModelField.__init__
File "pydantic/fields.py", line 555, in pydantic.fields.ModelField.prepare
File "pydantic/fields.py", line 829, in pydantic.fields.ModelField.populate_validators
File "pydantic/validators.py", line 765, in find_validators
RuntimeError: no validator found for <class 'psm_utils.peptidoform.Peptidoform'>, see arbitrary_types_allowed in Config
WARNING: Tests failed for ms2pip-4.0.0.dev8-py310hc6dee1f_1.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
TESTS FAILED: ms2pip-4.0.0.dev8-py310hc6dee1f_1.tar.bz2
export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/ms2pip_1717959928228/test_tmp
import: 'ms2pip'
# Last 100 lines of the build log.
reason: |-
pydantic validator error