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cromwell requires gnu find #10297

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karl616 opened this issue Aug 7, 2018 · 0 comments
Closed

cromwell requires gnu find #10297

karl616 opened this issue Aug 7, 2018 · 0 comments

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@karl616
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karl616 commented Aug 7, 2018

Hi,
cromwell requires findutils rather than the busybox version

run:
- openjdk >=8
- python

some of the implementations of wdl functionality requires the find -empty flag. In a normal conda installation this isn't a problem as you can fall back on the host version of find, but it fails when converted to a biocontainer.

I'm trying to add findutils to conda-forge for this reason:
conda-forge/staged-recipes#6414

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