-
Notifications
You must be signed in to change notification settings - Fork 105
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
sambama depth base in v0.5.8 doesn't work with a regions file #167
Comments
Hi Rory, |
Hi Artem, Hmm-- I don't think that is it, I get 0 counts even if I run a ton of regions. I dissected out one region that looks like it should be generating counts: v0.5.8
v0.5.6
http://dl.dropbox.com/u/2822886/Screenshots/e6lk6pbwr4gy.png is a screenshot of the alignments in the region 1:979489-979637. I put up the test files here: https://dl.dropboxusercontent.com/u/2822886/sambamba-depth-test-files.tar |
Ok, I'll look into this. |
Thanks! You've been great about responding to issues, I really appreciate it. |
This bug was introduced by my awful fix of another bug (6d1f5a3), BED parser should be completely rewritten once I find time for that. |
haha-- I know that pain. Thanks for the quick fix Artem. |
v0.5.8:
v0.5.6
The text was updated successfully, but these errors were encountered: