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MyLake_Vansjo_run_T_scenarios.m
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MyLake_Vansjo_run_T_scenarios.m
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scen = {'T_only_full_scen_base_historical_20y', 'T_only_RCP4_GFDL', 'T_only_RCP4_IPSL', 'T_only_RCP8_GFDL', 'T_only_RCP8_IPSL', 'T_only_RCP45_NorESM', 'T_only_RCP85_NorESM'}
% start = {}
% scen = {'P_gradual_increase_2050_cutoff_to_0', 'P_gradual_increase_2045_cutoff_to_0', 'P_gradual_increase_2040_cutoff_to_0', 'P_gradual_increase_2035_cutoff_to_0', 'P_gradual_increase_2030_cutoff_to_0', 'P_gradual_increase_2025_cutoff_to_0', 'P_gradual_increase_2020_cutoff_to_0', 'P_gradual_increase_2015_cutoff_to_0'}
% scen = {'P_gradual_increase_2015_cutoff_to_0'}
parfor s = 1:size(scen,2)
% m_start=[1985, 1, 1]; %
% m_stop=[2040, 12, 31]; %
m_start=[2015, 1, 1]; %
m_stop=[2070, 12, 31]; %
[lake_params, sediment_params] = load_params();
% name_of_scenario = 'IO/airT_Scenarios/T_only_RCP4_IPSL.txt'
% file_name = 'IO/airT_Scenarios/T_only_RCP4_IPSL.mat'
% inaccurate but faster:
sediment_params{73} = 192;
sediment_params{74} = 0; % pH algo disabled;
% sediment_params{72} = 0; % effective depth test
% new added for cores
sediment_params{1} = 1.0549e-01; % 'k_Chl', % % 1
sediment_params{2} = 1.2624e-02; % 'k_POP', % % 1
sediment_params{3} = 5.2341e-02; % 'k_POC', % % 0.01
sediment_params{4} = 1.2941e-02; % 'k_DOP', % % 1
sediment_params{5} = 8.7662e-02; % 'k_DOC', % % 1
sediment_params{23} = 6.3601e+00; % 'k_pdesorb_a', %
sediment_params{24} = 1.1171e+01; % 'k_pdesorb_b', %
sediment_params{54} = 4.9036e+01; % 'k_pdesorb_c', %
% SO4 boundary
sediment_params{75} = 9.1213e+01;% % flux of sulphate from bottom of the sediment. Custom boundary condition for Vansjo
% for cores too (scaling unknown inputs):
lake_params{22} = 6.9253e+01;% scaling factor for inflow concentration of Chl a (-)
lake_params{25} = 8.4622e-01;% Scaling factor for inflow concentration of O2 (-)
lake_params{27} = 1.6113e+01;% Scaling factor for inflow concentration of NO3 (-)
lake_params{34} = 3.6356e+01;% Scaling factor for inflow concentration of Fe3 (-)
lake_params{35} = 4.1063e+01;% Scaling factor for inflow concentration of Al3 (-)
lake_params{37} = 6.4648e+01;% Scaling factor for inflow concentration of CaCO3 (-)
% P minerals:
sediment_params{31} = 9.4278e-01;% k_apa_pre
sediment_params{32} = 7.7780e+00;% k_apa_pre
sediment_params{40} = 1.3434e+00;% k_viv_pre
sediment_params{41} = 2.1799e+00;% k_viv_pre
sediment_params{8} = 8.7728e+01;% Km FeOH3
sediment_params{9} = 3.1972e+00;% Km FeOOH
lake_params{24} = 1.0120e+00; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 7.6529e-01; % 1 % 20 scaling factor for inflow concentration of TP (-)
lake_params{47} = 1.6558e-01; % 50.0000e-003 % 47 settling velocity for Chl1 a (m day-1)
lake_params{49} = 1.7861e-01; % 110.6689e-003 % 49 loss rate (1/day) at 20 deg C
lake_params{50} = 1.3772e+00; % 1.0000e+000 % 50 specific growth rate (1/day) at 20 deg C
lake_params{53} = 2.9236e-01; % 638.9222e-003 % 53 Half saturation growth P level (mg/m3)
lake_params{56} = 1.1681e-01; % 204.8121e-003 % 56 Settling velocity for Chl2 a (m day-1)
lake_params{57} = 2.3063e-01; % 167.6746e-003 % 57 Loss rate (1/day) at 20 deg C
lake_params{58} = 1.4571e+00; % 1.0985e+000 % 58 Specific growth rate (1/day) at 20 deg C
lake_params{59} = 3.2470e-01; % 1.5525e+000 % 59 Half saturation growth P level (mg/m3)
lake_params{46} = 7.7897e-02; % 53.9466e-003 % % 46 settling velocity for S (m day-1)
lake_params{10} = 8.3890e-05; % 24.5705e-006 % 10 PAR saturation level for phytoplankton growth (mol(quanta) m-2 s-1)
lake_params{54} = 7.3357e-05; % 75.5867e-006 % 16 PAR saturation level for phytoplankton growth (mol(quanta) m-2 s-1)
lake_params{12} = 4.5000e-02; % 45.0000e-003 % 12 Optical cross_section of chlorophyll (m2 mg-1)
lake_params{55} = 4.5000e-02; % 29.6431e-003 % 17 Optical cross_section of chlorophyll (m2 mg-1)
% ======================================================================
% NOTE: trials
lake_params{24} = 1.0; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 1.0; % 20 scaling factor for inflow concentration of TP (-)
sediment_params{52} = 40;% accel
lake_params{37} = 1;% Scaling factor for inflow concentration of CaCO3 (-)
lake_params{50} = 2.5; % 1.0000e+000 % 50 specific growth rate (1/day) at 20 deg C
lake_params{58} = 2.5; % 1.0985e+000 % 58 Specific growth rate (1/day) at 20 deg C
lake_params{47} = 0.05; % 50.0000e-003 % 47 settling velocity for Chl1 a (m day-1)
lake_params{56} = 0.05; % 204.8121e-003 % 56 Settling velocity for Chl2 a (m day-1)
lake_params{46} = 0.05; % 53.9466e-003 % % 46 settling velocity for S (m day-1)
lake_params{53} = 10; % 638.9222e-003 % 53 Half saturation growth P level Chl1 (mg/m3)
lake_params{59} = 10; % 1.5525e+000 % 59 Half saturation growth P level Chl2 (mg/m3)
lake_params{10} = 1.03890e-05; % 24.5705e-006 % 10 PAR saturation level for phytoplankton growth (mol(quanta) m-2 s-1)
lake_params{54} = 1.03357e-05; % 75.5867e-006 % 16 PAR saturation level for phytoplankton growth (mol(quanta) m-2 s-1)
lake_params{18} = 10; % 1.5525e+000 % 18 Isc C
lake_params{22} = 10; % 1.5525e+000 % 22 Isc Chl
% Sediment cores:
lake_params{24} = 1.4; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 1.9; % 20 scaling factor for inflow concentration of TP (-)
lake_params{46} = 0.1; % 53.9466e-003 % % 46 settling velocity for S (m day-1)
lake_params{19} = 100+20; % 19 scaling factor for inflow concentration of POC (-)
sediment_params{8} = 1.5*10*100*2.5;% Km FeOH3 pvc 100, umol/g, rho = 2.5
sediment_params{9} = 1.5*10*100*2.5;% Km FeOOH
sediment_params{15} = sediment_params{8};% 'Kin_FeOH3', % 15 % the same as Km rho=2.5
sediment_params{16} = sediment_params{9};% 'Kin_FeOOH', % 16 % the same as Km rho=2.5
lake_params{34} = 550; % Scaling factor for inflow concentration of Fe3 (-)
lake_params{31} = 1; % 'I_scCa2', % 31 Scaling factor for inflow concentration of Ca2 (-)
lake_params{37} = 5; % Isc CaCO3
% sediment_params{31} = 0.00037; % 'k_apa_pre', % 31
% sediment_params{62} = 0; % 7.2; % 'alfa0', % 62
sediment_params{23} = 40; % 'k_pdesorb_a', %
sediment_params{24} = 40; % 'k_pdesorb_b', %
sediment_params{54} = 40; % 'k_pdesorb_c', %
lake_params{35} = 0.001;% Scaling factor for inflow concentration of Al3 (-)
% -> FeS -> FeS2 -> FeOOH
sediment_params{30} = 0.04; % 'k_fe_pre', %
sediment_params{45} = 0.12; % 'k_FeSpre', %
sediment_params{75} = 0.5; % 9.0;% % flux of SO4 Vansjo
sediment_params{10} = 1000;% Km SO4
% Apatite:
sediment_params{33} = 10^-10.22;
sediment_params{31} = 0.000037/3; %/10; % apa_pre
sediment_params{32} = 0.037; % apa_dis
% % Vivenite
sediment_params{40} = 0.00037*10*1.5; % 0.00037; %, 'k_viv_pre', % 40
sediment_params{41} = 0.37/7; % 0.37; %, 'k_viv_dis', % 41
% sediment_params{40} = 0.00037*10*4; % 0.00037; %, 'k_viv_pre', % 40
% sediment_params{41} = 0.2; % 0.37; %, 'k_viv_dis', % 41
% FeCO3 and CaCO3
% sediment_params{37} = 180; % 'k_FeCO3_pre', % 37 % Cappellen (1996)
% sediment_params{38} = 0.25; % 'k_FeCO3_dis', % 38 % Cappellen (1996)
% sediment_params{34} = 0.04; %0.04, 'k_CaCO3_pre', % 34 % Katsev (2013)
% sediment_params{35} = 0.05; %0.05, 'k_CaCO3_dis', % 35 % Katsev (2013)
% NOTE: Chl changed here
lake_params{50} = 2; % 1.0000e+000 % 50 specific growth rate (1/day) at 20 deg C
lake_params{58} = 2; % 1.0985e+000 % 58 Specific growth rate (1/day) at 20 deg C
lake_params{47} = 0.05; % 50.0000e-003 % 47 settling velocity for Chl1 a (m day-1)
lake_params{56} = 0.05; % 204.8121e-003 % 56 Settling velocity for Chl2 a (m day-1)
lake_params{53} = 15; % 638.9222e-003 % 53 Half saturation growth P level Chl1 (mg/m3)
lake_params{59} = 15; % 1.5525e+000 % 59 Half saturation growth P level Chl2 (mg/m3)
% changed OM rates:
sediment_params{52} = 300;% accel
sediment_params{1} = 1/13 * 0.1; % 'k_Chl', % % 1
sediment_params{2} = 1/13 * 0.012; % 'k_POP', % % 1
sediment_params{3} = 1/13 * 0.05; % 'k_POC', % % 0.01
sediment_params{4} = 1/13 * 0.013; % 'k_DOP', % % 1
sediment_params{5} = 1/13 * 0.088; % 'k_DOC', % % 1
% To play with this parameter
sediment_params{72} = 30; % 'effective_depth', % 72 % depth below which the lake is affected by sediments, [m], if -1 (experimental) , then sediments below pycnocline
% Bioirrigation
sediment_params{62} = 7.2; %7.2, 'alfa0', % 62
sediment_params{62} = 1; %0.15*0.5, 'Kd_fe2', % 53
% rate of dissollution and precipitation should be equal for Viv and Apa
% Apatite:
sediment_params{33} = 10^-10.22;
sediment_params{31} = 0.000037/3/10*1.1; %/10; % apa_pre
sediment_params{32} = 0.037; % apa_dis
% % Vivenite
sediment_params{40} = 0.00037*10*1.5*2; % 0.00037; %, 'k_viv_pre', % 40
sediment_params{41} = 0.37/7/10; % 0.37; %, 'k_viv_dis', % 41
lake_params{37} = 5/2; % Isc CaCO3
lake_params{34} = 600; % Scaling factor for inflow concentration of Fe3 (-)
% To improove fit of Ca2=>PO4, we can play with initial CaCO3 concentration;
sediment_params{23} = 5; % 'k_pdesorb_a', %
sediment_params{24} = 5; % 'k_pdesorb_b', %
sediment_params{54} = 5; % 'k_pdesorb_c', %
% NOTE: Chl changed here
lake_params{50} = 2*0.8; % 1.0000e+000 % 50 specific growth rate (1/day) at 20 deg C
lake_params{58} = 2*0.8; % 1.0985e+000 % 58 Specific growth rate (1/day) at 20 deg C
lake_params{47} = 0.05*1.2; % 50.0000e-003 % 47 settling velocity for Chl1 a (m day-1)
lake_params{56} = 0.05*1.2; % 204.8121e-003 % 56 Settling velocity for Chl2 a (m day-1)
lake_params{53} = 15*0.8; % 638.9222e-003 % 53 Half saturation growth P level Chl1 (mg/m3)
lake_params{59} = 15*0.8; % 1.5525e+000 % 59 Half saturation growth P level Chl2 (mg/m3)
lake_params{24} = 1.4; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 1.6; % 20 scaling factor for inflow concentration of TP (-)
% % NOTE: setting up sediments below pycnocline:
sediment_params{72} = 17; % 'effective_depth', % 72 % depth below which the lake is affected by sediments, [m], if -1 (experimental) , then sediments below pycnocline
lake_params{24} = 1.0; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 1.0; % 20 scaling factor for inflow concentration of TP (-)
% % NOTE: setting up sediments below pycnocline:
sediment_params{72} = 17; % 'effective_depth', % 72 % depth below which the lake is affected by sediments, [m], if -1 (experimental) , then sediments below pycnocline
lake_params{24} = 1.0; % 390.1162e-003 % 24 scaling factor for inflow concentration of POP (-)
lake_params{20} = 1.0; % 20 scaling factor for inflow concentration of TP (-)
% Q10 off
% lake_params{70} = 1, % 70 Q10 for reactions of respiration
name_of_scenario = strcat('IO/Scenarios/', scen{s}, '.txt')
% file_name = strcat('IO/Scenarios/', num2str(sediment_params{73}),'ts_', scen{s}, '2000_2030.mat')
file_name = strcat('IO/Scenarios/', num2str(sediment_params{73}), 'ts_', scen{s}, '_17m_sediment_2015_2070.mat')
tic
disp('Started at:')
disp(datetime('now'));
is_metrics = true; % print metrics in the end
save_initial_conditions = false; % save final concentrations as initial for the next run
% try
run_ID = 0;
clim_ID = 0;
run_INCA = 0; % 1- MyLake will run INCA, 0- No run
use_INCA = 0; % 1- MyLake will take written INCA input, either written just now or saved before, and prepare inputs from them. 0- MyLake uses hand-made input files
[MyLake_results, Sediment_results] = fn_MyL_application(m_start, m_stop, sediment_params, lake_params, name_of_scenario, use_INCA, run_INCA, run_ID, clim_ID, save_initial_conditions); % runs the model and outputs obs and sim
disp('Saving results...')
parsave(file_name, MyLake_results, Sediment_results)
disp('Finished at:')
disp(datetime('now'));
% if is_metrics == true
% load('Postproc_code/Vansjo/VAN1_data_2017_02_28_10_55.mat')
% depths = [5;10;15;20;25;30;35;40];
% rmsd_O2 = 0;
% for i=1:size(depths,1)
% d = depths(i);
% zinx=find(MyLake_results.basin1.z == d);
% O2_measured = res.T(res.depth1 == d);
% day_measured = res.date(res.depth1 == d);
% day_measured = day_measured(~isnan(O2_measured));
% O2_measured = O2_measured(~isnan(O2_measured));
% O2_mod = MyLake_results.basin1.concentrations.O2(zinx,:)'/1000;
% [T_date,loc_sim, loc_obs] = intersect(MyLake_results.basin1.days, day_measured);
% % rmsd_O2 = rmsd_O2 + RMSE(O2_mod(loc_sim, 1), O2_measured(loc_obs, 1));
% rmsd_O2 = rmsd_O2 + sqrt(mean((O2_mod(loc_sim, 1)-O2_measured(loc_obs, 1)).^2));
% end
% zinx=find(MyLake_results.basin1.z<4);
% TP_mod = mean((MyLake_results.basin1.concentrations.P(zinx,:)+MyLake_results.basin1.concentrations.PP(zinx,:) + MyLake_results.basin1.concentrations.DOP(zinx,:) + MyLake_results.basin1.concentrations.POP(zinx,:))', 2);
% Chl_mod = mean((MyLake_results.basin1.concentrations.Chl(zinx,:)+MyLake_results.basin1.concentrations.C(zinx,:))', 2);
% P_mod = mean((MyLake_results.basin1.concentrations.P(zinx,:))', 2);
% POP_mod = mean((MyLake_results.basin1.concentrations.POP(zinx,:) + MyLake_results.basin1.concentrations.PP(zinx,:))', 2);
% load 'obs/store_obs/TOTP.dat' % measured
% load 'obs/store_obs/Cha.dat' % measured
% load 'obs/store_obs/PO4.dat' % measured
% load 'obs/store_obs/Part.dat' % measured
% [TP_date,loc_sim, loc_obs] = (intersect(MyLake_results.basin1.days, TOTP(:,1)));
% rmsd_TOTP = sqrt(mean((TP_mod(loc_sim, 1)-TOTP(loc_obs, 2)).^2));
% [TP_date,loc_sim, loc_obs] = (intersect(MyLake_results.basin1.days, Cha(:,1)));
% rmsd_Chl = sqrt(mean((Chl_mod(loc_sim, 1)-Cha(loc_obs, 2)).^2));
% [TP_date,loc_sim, loc_obs] = (intersect(MyLake_results.basin1.days, PO4(:,1)));
% rmsd_PO4 = sqrt(mean((P_mod(loc_sim, 1)-PO4(loc_obs, 2)).^2));
% [TP_date,loc_sim, loc_obs] = (intersect(MyLake_results.basin1.days, Part(:,1)));
% rmsd_PP = sqrt(mean((POP_mod(loc_sim, 1)-Part(loc_obs, 2)).^2));
% disp('RMSD 3xRMSE(P)+RMSE(O2):')
% disp(sum([3*rmsd_TOTP, 3*rmsd_Chl, 3*rmsd_PO4, 3*rmsd_PP, rmsd_O2]))
% disp('RMSD = RMSE(P)+RMSE(O2):')
% disp(sum([rmsd_TOTP, rmsd_Chl, rmsd_PO4, rmsd_PP, rmsd_O2]))
% end
% toc
end
% end