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setup.cfg
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setup.cfg
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[metadata]
name = howard
version = 0.11.0
description = Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
long_description_content_type = HOWARD annotates and prioritizes genetic variations, calculates and normalizes annotations, convert on multiple formats, query variations and generates statistics
keywords = VCF variant annotation ranking
author = Antony Le Bechec
author_email = bioinfo@chru-strasbourg.fr
[options]
python_requires = >=3.10, <3.11
packages = find:
install_requires =
# conda install conda-forge::py-bgzip~=0.4
pandas~=2.2
duckdb~=1.0
pyarrow~=16.1
bio~=1.7
pyvcf3~=1.0
dask~=2023.12
pytest~=8.2
coverage~=7.5
fastparquet~=2024.5
polars~=0.20
genomepy~=0.16
flake8~=7.1
lazy~=1.6
pynose~=1.5
pyfaidx~=0.8
multiprocesspandas~=1.1
bgzip~=0.4
pgzip~=0.3
mgzip~=0.2
pysam~=0.22
jproperties~=2.1
psutil~=6.0
markdown~=3.6
tabulate~=0.9
md_toc~=9.0
numpy~=1.26
[options.entry_points]
console_scripts =
howard = howard.main:main