Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

An error with sample data #16

Open
augustkx opened this issue Sep 16, 2021 · 2 comments
Open

An error with sample data #16

augustkx opened this issue Sep 16, 2021 · 2 comments

Comments

@augustkx
Copy link

In the chi-square tests procedure, there is only 99% tests finished. And the running finished with
OSError: [Errno 16] Device or resource busy: '.nfs00000006c5e62a0a000dce8d', which is related to lib/python3.7/site-packages/multiprocess/process.py
Although all the outputs files are generated successfully.

Conducting the k-mer specific chi-square tests:
Azithromycin: 99% tests conducted.

I will appreciate it very much if anyone could help.

@erkiaun
Copy link
Collaborator

erkiaun commented Oct 12, 2021

Hi!

Haven't seen this error before. It seems that it tries to remove some file or directory that was used in communicating between processes, but this file or some file in this directory is still open. As it seems that the multiprocessed testing step remained unfinished and some multiprocessing files open, couldnt it be that your system run out of space?

However, I have made some major updates in the code, I encourage you to have a try with this updated version.

@augustkx
Copy link
Author

Hi!
Thanks for the update!
Now, there are no errors related to multiprocesse, but there is still one point, which I am not sure if it is an error or not:

Conducting the k-mer specific chi-square tests:
Azithromycin: 99% tests conducted

Screenshot from 2021-10-13 17-30-16

Is the 99% normal?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants