layout	permalink	title	header1	header2	image	keywords	description	instructors	length
workshop_main_3day	/IDE_2021	Infectious Disease Epidemiology Analysis	Workshop Pages for Students	Infectious Disease Epidemiology Analysis 2021	/site_images/CBW_Metagenome_icon.jpg	Infectious Disease Epidemiology Analysis	Infectious Disease Epidemiology Analysis		3 days

Welcome

The course schedule can be found here

Meet your faculty here

Pre-Workshop Materials

Pre-work including programs to install can be found here

AWS Module

Connecting and properly using a cloud computing cluster at the CBW here

Class Photo

comming soon

Day 1

Welcome

Rachade/Francis

Module1: Introduction to Genomic Epidemiology

William Hsiao

Module 1 Lecture

Module 2: Phylogenetic Analysis

William Hsiao

Module 2 Lecture

Module 3: Molecular Typing

Ed Taboada & Dillon Barker

Module 3 Lecture

Labs

Day 2

Module 4: Phylogenetics, Phylodynamics, and MGE

Rob Beiko

Module 4 Lecture

Labs

Module 5: Antimicrobial Resistant Gene Analysis

Finlay Maguire

Module 5 Lecture

Labs

Day 3

Module 6: Emerging Pathogen Detection and Identification

Gary Van Domselaar

Module 6 Lecture

Labs

Module 7: Keynote: Canada's National SARS-CoV-2 Genomics Program

Gary Van Domselaar

Module 7 Keynote

Module 8: Integrated Assignment

Venus Lau & Jimmy Liu

Integrated Assignment