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FROM bioconductor/release_base
MAINTAINER Mark Dunning<mark.dunning@cruk.cam.ac.uk>
RUN apt-get update && apt-get install -y git
###Get repository of the course. Install data and R packages
RUN git clone https://github.com/bioinformatics-core-shared-training/ngs-in-bioc.git /home/rstudio/
WORKDIR /home/rstudio
RUN wget https://www.dropbox.com/s/ve6o68hkbthe3lo/exampleData.zip
RUN mkdir Practicals/nki
RUN unzip exampleData.zip
RUN R -f installBioCPkgs.R
RUN rm -r images javascripts stylesheets params.json index.html exampleData.zip
RUN mkdir Practicals/exampleData
RUN mv exampleData/* Practicals/exampleData
RUN rm -r exampleData/
RUN wget https://www.dropbox.com/s/82p2dcwwo3qnf21/nki.zip -P Practicals/nki
WORKDIR Practicals/nki
RUN unzip nki.zip
RUN rm nki.zip
WORKDIR /home/rstudio