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infores_catalog.yaml
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---
information_resources:
- id: infores:agrkb
status: released
name: Alliance of Genome Resources (AGR Knowledgebase)
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Alliance-of-Genome-Resources
synonym:
- ALLIANCE
knowledge_level: knowledge_assertion
agent_type: not_provided
consumed_by:
- infores:biothings-agr
- id: infores:aact
status: released
name: Aggregate Analysis of ClinicalTrial.gov (AACT) database
xref:
- https://aact.ctti-clinicaltrials.org/
synonym:
- AACT
knowledge_level: knowledge_assertion
agent_type: not_provided
description: https://ctti-clinicaltrials.org/our-work/quality/state-of-clinical-trials/
Researchers can use CTTI’s Aggregate Analysis of ClinicalTrial.gov (AACT) database to
easily access and analyze data from the ClinicalTrials.gov registry to evaluate studies
and characterize the current state of clinical trials.
consumed_by:
- infores:multiomics-clinicaltrials
- id: infores:answer-coalesce
status: deprecated
name: Answer coalesce
xref:
- https://github.com/ranking-agent/AnswerCoalesce
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
Answer coalesce: This service accepts a TRAPI 1.1 object containing
answers and returns answers that have been coalesced by property, graph or ontology
analysis.
consumed_by:
- infores:arax
- id: infores:aragorn
status: released
name: ARAGORN
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/ARAGORN
knowledge_level: prediction
agent_type: not_provided
description: >-
ARAGORN: Performs a query operation which compiles data from numerous
ARAGORN ranking agent services.
consumed_by:
- infores:ars
consumes:
- infores:automat-binding-db
- infores:automat-cam-kp
- infores:automat-ctd
- infores:automat-drug-central
- infores:automat-ehr-may-treat-kp
- infores:automat-genome-alliance
- infores:automat-gtex
- infores:automat-gtopdb
- infores:automat-gwas-catalog
- infores:automat-hetionet
- infores:automat-hgnc
- infores:automat-hmdb
- infores:automat-human-goa
- infores:automat-icees-kg
- infores:automat-intact
- infores:automat-monarchinitiative
- infores:automat-panther
- infores:automat-pharos
- infores:automat-reactome
- infores:automat-robokop
- infores:automat-string-db
- infores:automat-ubergraph
- infores:automat-viral-proteome
- infores:cohd
- infores:connections-hypothesis
- infores:gelinea
- infores:genetics-data-provider
- infores:knowledge-collaboratory
- infores:molepro
- infores:multiomics-clinicaltrials
- infores:multiomics-drugapprovals
- infores:multiomics-microbiome
- infores:multiomics-multiomics
- infores:openpredict
- infores:rtx-kg2
- infores:service-provider-trapi
- infores:spoke
- infores:text-mining-provider-cooccurrence
- id: infores:aragorn-ranker
status: deprecated
name: ARAGORN Ranker
xref:
- https://github.com/ranking-agent/aragorn-ranker
synonym:
- ARAGORN
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
ARAGORN Ranker: The ranker used by the ARAGORN ARA, which takes a
TRAPI 1.0 message containing answers, and calculates numerical scores for each
answer.
- id: infores:arax
status: released
name: ARAX Translator Reasoner
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Expander-Agent
synonym:
- ARAX
knowledge_level: prediction
agent_type: not_provided
description: TRAPI 1.1 endpoint for the NCATS Biomedical Translator Reasoner called ARAX
consumes:
- infores:answer-coalesce
- infores:automat-binding-db
- infores:automat-cam-kp
- infores:automat-ctd
- infores:automat-drug-central
- infores:automat-ehr-clinical-connections-kp
- infores:automat-ehr-may-treat-kp
- infores:automat-genome-alliance
- infores:automat-gtex
- infores:automat-gtopdb
- infores:automat-gwas-catalog
- infores:automat-hetionet
- infores:automat-hgnc
- infores:automat-hmdb
- infores:automat-human-goa
- infores:automat-icees-kg
- infores:automat-intact
- infores:automat-monarchinitiative
- infores:automat-panther
- infores:automat-pharos
- infores:automat-reactome
- infores:automat-robokop
- infores:automat-string-db
- infores:automat-ubergraph
- infores:automat-viral-proteome
- infores:cohd
- infores:connections-hypothesis
- infores:gelinea
- infores:genetics-data-provider
- infores:knowledge-collaboratory
- infores:molepro
- infores:multiomics-clinicaltrials
- infores:multiomics-drugapprovals
- infores:multiomics-microbiome
- infores:multiomics-multiomics
- infores:openpredict
- infores:rtx-kg2
- infores:service-provider-trapi
- infores:spoke
- infores:text-mining-provider-cooccurrence
consumed_by:
- infores:ars
- id: infores:atc-codes-umls
status: released
name: Anatomical Therapeutic Chemical (ATC) Codes (from UMLS)
xref:
- https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ATC/index.html
consumed_by:
- infores:rtx-kg2
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:atgo
status: released
name: Autophagy Ontology
xref:
- https://pubmed.ncbi.nlm.nih.gov/28132844/
synonym:
- ATGO
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:athena
status: released
name: Athena
xref:
- https://athena.ohdsi.org/search-terms/start
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:automat-genome-alliance
status: released
name: Automat Alliance of Genome Resources
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
consumed_by:
- infores:aragorn
- infores:arax
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:automat-renci-sri-reference-kg
status: deprecated
name: Automat RENCI SRI Reference KG
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the [Monarch API (https://api.monarchinitiative.org/)](https://api.monarchinitiative.org/).
- id: infores:automat-chem-norm
status: deprecated
name: Automat Chemical normalization (trapi v-1.1.0)
description: >-
A graph linking together similar compounds. Two compounds are linked
by an edge in the graph if they are equivalent when charge, salts, and stereochemistry
are ignored.
knowledge_level: knowledge_assertion
agent_type: not_provided
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
- id: infores:automat-chembio
status: deprecated
name: Automat Chembio
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
A graph based on [chem2bio2rdf (http://cheminfov.informatics.indiana.edu:8080/c2b2r/)](http://cheminfov.informatics.indiana.edu:8080/c2b2r/).
- id: infores:automat-cord19
status: deprecated
name: Automat Cord19
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: not_provided
agent_type: text_mining_agent
description: >-
A literature co-occurence graph based on parsing the CORD-19 paper set.
- id: infores:automat-cord19-scibite
status: deprecated
name: Automat Cord19 Scibite (trapi v-1.1.0)
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: not_provided
agent_type: text_mining_agent
description: >-
A literature co-occurence graph based on the [scibite parsing (https://github.com/SciBiteLabs/CORD19)](https://github.com/SciBiteLabs/CORD19)
of the CORD-19 paper set.
- id: infores:automat-cord19-scigraph
status: deprecated
name: Automat Cord19 Scigraph (trapi v-1.1.0)
description: >-
A literature co-occurence graph based on scigraph parsing of the CORD-19
paper set. All triples contain covid-19 as either subject or object.
knowledge_level: not_provided
agent_type: text_mining_agent
- id: infores:automat-covid-phenotypes
status: deprecated
name: Automat Covid Phenotypes (trapi v-1.1.0)
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A hand-knowledge_assertion graph of phenotypes of covid-19.
- id: infores:automat-covidkop
status: deprecated
name: Automat Covidkop KG (trapi v-1.1.0)
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
Knowledge graph constructed from Robokop KG by incorporating Cord-19
dataset and other covid related knowledge sources.
- id: infores:automat-cam-kp
status: released
name: Automat CAM-KP
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: TRAPI interface to database of Causal Activity Models
consumed_by:
- infores:aragorn
- infores:arax
- id: infores:automat-ctd
status: released
name: Automat CTD
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the [Comparative Toxicogenomics Database (ctdbase.org)](ctdbase.org).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-drug-central
status: released
name: Automat DrugCentral
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on DrugCentral
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-foodb
status: released
name: Automat Foodb
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph of the food/chemical relationships in [foodb.ca](foodb.ca).
- id: infores:automat-gtex
status: released
name: Automat GTEx
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
A graph containing eqtl and sqtl information from [GTEx Portal (https://gtexportal.org/home/)](https://gtexportal.org/home/).
Also includes genes that the variants lie within or near.
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-gtopdb
status: released
name: Automat GtoPdb
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the [IUPHAR Guide to Pharmacology (https://www.guidetopharmacology.org/)](https://www.guidetopharmacology.org/)
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-gwas-catalog
status: released
name: Automat GWAS Catalog
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the GWAS Catalog
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-hetio
status: deprecated
name: Automat Hetio
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on [hetionet (het.io)](het.io).
- id: infores:automat-hetionet
status: released
name: Automat Hetionet
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on [hetionet (het.io)](het.io).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-hgnc
status: released
name: Automat HGNC
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Gene families from [HGNC (genenames.org)](genenames.org).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-hmdb
status: released
name: Automat HMDB
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the [Human Metabolome DataBase (hmdb.org)](hmdb.org).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-human-goa
status: released
name: Automat Human GOA
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Human Gene Ontology Annotations from the GO consortium.
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-icees-kg
status: released
name: Automat ICEES KG
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: statistical_association
agent_type: not_provided
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-intact
status: released
name: Automat IntAct
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Molecular (Gene-Gene) interactions from EBI IntAct (https://www.ebi.ac.uk/intact/)](https://www.ebi.ac.uk/intact/).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-kegg
status: deprecated
name: Automat KEGG
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on the [Kyoto Encyclopedia of Genes and Genomes (https://www.genome.jp/kegg/)](https://www.genome.jp/kegg/).
- id: infores:automat-monarchinitiative
status: released
name: Automat Monarch Initiative
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
The Monarch Knowledge Graph is a reference implementation of the Biolink model specification. It
contains data from the Monarch Initiative aggregated database as well as several OBO ontologies.
consumed_by:
- infores:aragorn
- infores:arax
- id: infores:automat-mychem-info
status: deprecated
name: Automat MyChem (trapi v-1.1.0)
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
A graph integrating DrugBank, DrugCentral, and Aeolus data as provided
by [mychem.info](mychem.info).
- id: infores:automat-ontology-hierarchy
status: deprecated
name: Automat Ontological Hierarchy (trapi v-1.1.0)
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph for ontological hierarchy extracted from Uberongraph.
- id: infores:automat-openhealthdata-carolina
status: released
name: Automat Openhealth Data at Carolina
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: statistical_association
agent_type: not_provided
description: >-
A graph based on infores:openhealthdata-carolina, providing access to counts
and frequencies of conditions, procedures, drug exposures, and patient demographics,
and the co-occurrence frequencies between them.
consumed_by:
- infores:aragorn
- id: infores:automat-panther
status: released
name: Automat PANTHER
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph of gene families and pathways from [Panther (pantherdb.org)](pantherdb.org)
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-pharos
status: released
name: Automat Pharos
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A graph based on [Pharos (pharos.nih.gov)](pharos.nih.gov).
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-robokop-kg
status: released
name: Automat ROBOKOP KG
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Biomedical Knowledge graph build by constructing relationships from federated
data sets.
- id: infores:automat-text-mining-provider
status: deprecated
name: Automat Textmining KP
knowledge_level: knowledge_assertion
agent_type: not_provided
description: A literature co-occurrence graph created by the Translator Text Mining KP.
- id: infores:automat-string-db
status: released
name: Automat STRING
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
The Search Tool for the Retrieval of INteracting Genes/proteins (STRING)
database provides information on known and prediction protein-protein interactions
(both direct and indirect) derived from genomic context predictions, high-throughput
laboratory experiments, conserved co-expression, automated text mining, and aggregated
knowledge from primary data sources.
consumed_by:
- infores:aragorn
- infores:arax
- id: infores:automat-sri-reference-kg
status: deprecated
name: Automat SRI Reference Knowledge Graph
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/SRI-Reference-Knowledge-Graph
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
The SRI reference KG aims to aggregate knowledge sources across translator
using KGX. The initial graph contains data files provided by the Monarch Initiative
and several ontologies.
- id: infores:automat-ubergraph
status: released
name: Automat Ubergraph
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
A graph representation of Ubergraph, an integration of ontologies
including GO, CHEBI, Uberon, and HPO.
consumed_by:
- infores:aragorn
- infores:arax
- infores:cohd
- id: infores:automat-ubergraph-nonredundant
status: deprecated
name: Automat Ubergraph Nonredundant
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
A graph representation of Ubergraph, an integration of ontologies
including GO, CHEBI, Uberon, and HPO. The redundant version of Ubergraph contains
the complete inference closure for all subclass and existential relations, including
transitive, reflexive subclass relations.
- id: infores:automat-viral-proteome
status: released
name: Automat Viral Proteome
knowledge_level: knowledge_assertion
agent_type: not_provided
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
description: >-
A graph consisting of viral proteins from UniProt, connected by similarity
edges from UniRef.
consumed_by:
- infores:aragorn
- infores:arax
- infores:service-provider-trapi
- id: infores:automat-ehr-may-treat-kp
status: released
name: Automat Multiomics EHRMLA May Treat API
knowledge_level: knowledge_assertion
agent_type: not_provided
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
description: >-
A graph consisting of May Treat associations from Multiomics Electronic-Health-Record
(EHR) Machine Learning Analysis (MLA)
using the Providence health records
consumed_by:
- infores:aragorn
- infores:arax
consumes:
- infores:providence-st-joseph-ehr
- id: infores:automat-ehr-clinical-connections-kp
status: released
name: Automat Multiomics EHRMLA Clinical Connections API
knowledge_level: knowledge_assertion
agent_type: not_provided
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Automat
description: >-
A graph consisting of clinical connections associations from Multiomics Electronic-Health-Record
(EHR) Machine Learning Analysis (MLA)
using the Providence health records
consumed_by:
- infores:arax
- id: infores:bfo
status: released
name: Basic Formal Ontology
xref:
- http://www.obofoundry.org/ontology/bfo.html
synonym:
- BFO
consumed_by:
- infores:rtx-kg2
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:bgee
status: released
name: Bgee
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Bgee
synonym:
- BGEE
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:bigclam
status: deprecated
name: Big Cell Line Association Miner
xref:
- https://github.com/PriceLab/translator-bigquery-api
synonym:
- BigClam
knowledge_level: statistical_association
agent_type: not_provided
- id: infores:bigg-models
status: released
name: BiGG Models
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BiGG-Models
synonym:
- BIGG
knowledge_level: knowledge_assertion
agent_type: not_provided
description: a knowledgebase of genome-scale metabolic network reconstructions
consumed_by:
- infores:molepro
- id: infores:biggim
status: deprecated
name: Big Gene Interaction Miner
xref:
- https://github.com/PriceLab/translator-bigquery-api/
synonym:
- BigGIM
knowledge_level: statistical_association
agent_type: not_provided
- id: infores:bindingdb
status: released
name: BindingDB
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/bindingdb
synonym:
- The Binding Database
knowledge_level: knowledge_assertion
agent_type: not_provided
description: >-
BindingDB is a public, web-accessible database of measured binding
affinities, focusing chiefly on the interactions of protein considered to be drug-targets
with small, drug-like molecules. As of July 31, 2021, BindingDB contains 41,300
Entries, each with a DOI, containing 2,303,972 binding data for 8,561 protein
targets and 995,797 small molecules.
consumed_by:
- infores:biothings-bindingdb
- infores:molepro
- id: infores:bio2rdf
status: released
name: Bio2RDF
xref:
- https://bio2rdf.org
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:biocatalogue
status: deprecated
name: BioCatalogue
knowledge_level: other
agent_type: not_provided
- id: infores:biogrid
status: released
name: 'The Biological General Repository for Interaction Datasets '
xref:
- https://thebiogrid.org/
synonym:
- BioGrid
knowledge_level: knowledge_assertion
agent_type: not_provided
consumed_by:
- infores:biothings-multiomics-biggim-drugresponse
- id: infores:biolink-api
status: released
name: BioLink API
xref:
- http://api-v3.monarchinitiative.org/
knowledge_level: knowledge_assertion
agent_type: not_provided
description: API integration layer for linked biological objects.
- id: infores:biolink-model-lookup
status: released
name: Biolink Model Lookup
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Biolink-Lookup-Service
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Biolink Model Lookup service.
- id: infores:biolink-ontology
status: released
name: Biolink ontology
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioLink-OWL
consumed_by:
- infores:rtx-kg2
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:bioportal
status: released
name: National Center for Biomedical Ontology BioPortal
xref:
- http://bioportal.bioontology.org/
synonym:
- bioportal
knowledge_level: knowledge_assertion
agent_type: not_provided
- id: infores:biothings-biggim-1
status: deprecated
name: Big GIM 1 API
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the Big GIM 1 KP query web services.
- id: infores:biothings-dgidb
status: released
name: BioThings DGIdb API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: mixed
agent_type: not_provided
description: Documentation of the BioThings DGIdb query web services.
consumes:
- infores:dgidb
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-diseases
status: released
name: BioThings DISEASES API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: mixed
agent_type: not_provided
description: Documentation of the DISEASES query web services.
consumes:
- infores:diseases
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-ebi-gene2phenotype
status: released
name: BioThings EBIgene2phenotype API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the EBIgene2phenotype query web services.
consumes:
- infores:ebi-gene2phenotype
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-explorer
status: released
name: BioThings Explorer
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-Explorer-(BTE)
synonym:
- BTE
consumes:
- infores:service-provider-trapi
consumed_by:
- infores:ars
knowledge_level: prediction
agent_type: not_provided
- id: infores:service-provider-trapi
status: released
name: Service Provider TRAPI endpoints
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Service-Provider-TRAPI
synonym:
- service provider
knowledge_level: other
agent_type: not_provided
consumes:
- infores:automat-ctd
- infores:automat-drug-central
- infores:automat-gtex
- infores:automat-gtopdb
- infores:automat-gwas-catalog
- infores:automat-hetionet
- infores:automat-hgnc
- infores:automat-hmdb
- infores:automat-human-goa
- infores:automat-icees-kg
- infores:automat-intact
- infores:automat-panther
- infores:automat-pharos
- infores:automat-robokop
- infores:automat-viral-proteome
- infores:biothings-agr
- infores:biothings-bindingdb
- infores:biothings-bioplanet-pathway-disease
- infores:biothings-bioplanet-pathway-gene
- infores:biothings-ddinter
- infores:biothings-dgidb
- infores:biothings-diseases
- infores:biothings-ebi-gene2phenotype
- infores:biothings-foodb
- infores:biothings-fooddata-central
- infores:biothings-go-bp
- infores:biothings-go-cc
- infores:biothings-go-mf
- infores:biothings-gtrx
- infores:biothings-hpo
- infores:biothings-idisk
- infores:biothings-innatedb
- infores:biothings-mgi-g2p
- infores:biothings-multiomics-biggim-drugresponse
- infores:biothings-multiomics-ehr-risk
- infores:biothings-multiomics-wellness
- infores:biothings-pfocr
- infores:biothings-rare-source
- infores:biothings-repodb
- infores:biothings-rhea
- infores:biothings-semmeddb
- infores:biothings-suppkg
- infores:biothings-ttd
- infores:biothings-uberon-ontology
- infores:cohd
- infores:complex-portal
- infores:connections-hypothesis
- infores:ctd
- infores:ebi-proteins
- infores:ebi-quick-go
- infores:litvar
- infores:molepro
- infores:monarchinitiative
- infores:multiomics-clinicaltrials
- infores:multiomics-drugapprovals
- infores:multiomics-microbiome
- infores:multiomics-multiomics
- infores:mychem-info
- infores:mydisease-info
- infores:mygene-info
- infores:myvariant-info
- infores:ols
- infores:text-mining-provider-targeted
consumed_by:
- infores:aragorn
- infores:arax
- infores:biothings-explorer
- id: infores:biothings-go-bp
status: released
name: BioThings Gene Ontology Biological Process API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the Gene Ontology Biological Process query web services.
consumes:
- infores:go
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-go-cc
status: released
name: BioThings Gene Ontology Cellular Component API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the Gene Ontology Cellular Component query web services.
consumes:
- infores:go
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-go-mf
status: released
name: BioThings Gene Ontology Molecular Activity API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the Gene Ontology Molecular Activity query web services.
consumes:
- infores:go
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-hpo
status: released
name: BioThings Human Phenotype Ontology API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the HPO query web services.
consumes:
- infores:hpo
- infores:hpo-annotations
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-idisk
status: released
name: BioThings iDISK API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: mixed
agent_type: not_provided
consumes:
- infores:idisk
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-mgi-g2p
status: released
name: BioThings MGIgene2phenotype API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/BioThings-APIs
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the MGIgene2phenotype query web services.
consumes:
- infores:mgi
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-multiomics-biggim-drugresponse
status: released
name: Multiomics BigGIM-DrugResponse KP API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Big-GIM-II:-Drug-Response-KP
- https://github.com/NCATS-Tangerine/BigGIM_APIWrapper
knowledge_level: knowledge_assertion
agent_type: not_provided
description: Documentation of the Drug Response KP query web services.
consumes:
- infores:biogrid
- infores:huri
- infores:gtex
- infores:ttd
- infores:tcga
- infores:gdsc
consumed_by:
- infores:service-provider-trapi
- id: infores:biothings-multiomics-ehr-risk
status: modified
name: Multiomics EHR Risk KP API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/EHR-Risk-KP
knowledge_level: statistical_association
agent_type: not_provided
description: >-
Documentation of the Multiomics Electronic-Health-Record (EHR) Risk
KP query web services.
consumed_by:
- infores:service-provider-trapi
- id: infores:providence-st-joseph-ehr
status: released
name: Providence St. Joseph EHR Data
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/EHR-KP-Providence-Health-Systems-and-Affiliates-Data
knowledge_level: knowledge_assertion
agent_type: not_provided
consumed_by:
- infores:automat-ehr-may-treat-kp
description: >-
A partnership with Providence/Swedish Health Services and Institute
for Systems Biology allows analysis of 26 million EHRs from patients in seven
states in the US, including Alaska, California, Montana, Oregon, Washington, Texas,
and New Mexico. Please email data-access@isbscience.org for more information.
- id: infores:isb-EHRMLA-data
status: released
name: Multiomics EHRMLA May Treat API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Multiomics-EHRMLA-May-Treat-KP
knowledge_level: prediction
agent_type: computational_model
description: >-
Documentation of the Multiomics Electronic-Health-Record (EHR) Machine Learning Analysis
(MLA) May Treat query web services.
- id: infores:isb-EHRMLA-clinicalconnections
status: released
name: Multiomics EHRMLA Clinical Connections API
xref:
- https://github.com/NCATSTranslator/Translator-All/wiki/Multiomics-EHRMLA-Clinical-Connections-KP
knowledge_level: prediction
agent_type: computational_model
description: >-
Documentation of the Multiomics Electronic-Health-Record (EHR) Machine Learning Analysis
(MLA) Clinical Connections query web services.
- id: infores:biothings-multiomics-wellness
status: released
name: Multiomics Wellness KP API
xref: