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Add ability to "turn off" KGX's prefix mapping functionality #412

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sierra-moxon opened this issue Sep 19, 2022 · 0 comments
Open

Add ability to "turn off" KGX's prefix mapping functionality #412

sierra-moxon opened this issue Sep 19, 2022 · 0 comments
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enhancement New feature or request

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@sierra-moxon
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sierra-moxon commented Sep 19, 2022

In the transform of various inputs (like obo files in KG-obo), we have the need to provide some IRI munging in order to normalize prefixes.

There are a few upstream sources of prefix maps:
github.com/linkml/linkml/prefixmaps (though this requires a bijective map, and sometimes we don't have those maps yet), which builds on the curies package (which uses bioregistry under the hood).

We'd like the ability to "turn off" KGX's munging of prefixes -- this may actually lead to a change upstream in biolink or linkml.

@sierra-moxon sierra-moxon added the enhancement New feature or request label Sep 19, 2022
@sierra-moxon sierra-moxon changed the title Add ability to "turn off" KGX Add ability to "turn off" KGX's prefix mapping functionality Sep 19, 2022
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