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environment.yml
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name: biomedisa
channels:
- anaconda
- conda-forge
- defaults
dependencies:
- _tflow_select=2.1.0=gpu
- abseil-cpp=20210324.2=h0e60522_0
- absl-py=1.4.0=pyhd8ed1ab_0
- aiohttp=3.8.4=py39ha55989b_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- aom=3.4.0=h0e60522_1
- astor=0.8.1=pyh9f0ad1d_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- blas=1.0=mkl
- blinker=1.6.2=pyhd8ed1ab_0
- blosc=1.21.1=h74325e0_3
- boost=1.74.0=py39hefe7e4c_5
- boost-cpp=1.74.0=h9f4b32c_8
- brotli=1.0.9=h8ffe710_7
- brotli-bin=1.0.9=h8ffe710_7
- bzip2=1.0.8=h8ffe710_4
- c-blosc2=2.3.1=hdf67494_0
- ca-certificates=2023.01.10=haa95532_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=4.2.4=pyhd8ed1ab_0
- certifi=2022.12.7=py39haa95532_0
- cffi=1.15.1=py39h68f70e3_3
- cfitsio=4.1.0=h5a969a9_0
- charls=2.3.4=h39d44d4_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=win_pyhd8ed1ab_2
- cloudpickle=2.2.1=pyhd8ed1ab_0
- colorama=0.4.5=pyhd8ed1ab_0
- contourpy=1.0.4=py39h2e07f2f_0
- cryptography=39.0.0=py39h58e9bdb_0
- cudatoolkit=11.3.1=h59b6b97_2
- cudnn=8.2.1=cuda11.3_0
- curl=7.83.1=h789b8ee_0
- cycler=0.11.0=pyhd8ed1ab_0
- cytoolz=0.12.0=py39hb82d6ee_0
- dask-core=2023.5.0=pyhd8ed1ab_0
- dav1d=1.0.0=h8ffe710_1
- dipy=1.5.0=py39hb0a1f21_1
- double-conversion=3.2.0=h0e60522_0
- eigen=3.4.0=h2d74725_0
- expat=2.5.0=h63175ca_1
- ffmpeg=4.3.1=ha925a31_0
- fftw=3.3.10=nompi_h52fa85e_103
- flatbuffers=23.3.3=h63175ca_0
- fonttools=4.37.1=py39hb82d6ee_0
- freeglut=3.2.2=h0e60522_1
- freetype=2.12.1=h546665d_0
- frozenlist=1.3.3=py39ha55989b_0
- fsspec=2023.5.0=pyh1a96a4e_0
- gast=0.4.0=pyh9f0ad1d_0
- giflib=5.2.1=h8d14728_2
- gl2ps=1.4.2=h0597ee9_0
- glew=2.1.0=h39d44d4_2
- google-auth=1.35.0=pyh6c4a22f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- grpcio=1.46.3=py39hb76b349_0
- h5py=3.7.0=nompi_py39hd4deaf1_100
- hdf4=4.2.15=h0e5069d_4
- hdf5=1.12.1=nompi_h2a0e4a3_104
- icc_rt=2022.1.0=h6049295_2
- icu=68.2=h0e60522_0
- idna=3.4=pyhd8ed1ab_0
- imagecodecs=2022.7.27=py39h1c15bc2_0
- imagecodecs-lite=2019.12.3=py39h5d4886f_5
- imageio=2.28.1=pyh24c5eb1_0
- importlib-metadata=6.6.0=pyha770c72_0
- importlib_metadata=6.6.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- intel-openmp=2021.4.0=h57928b3_3556
- itk=5.2.0=py39h832f523_0
- jasper=2.0.33=h77af90b_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h8ffe710_2
- jsoncpp=1.9.5=h2d74725_1
- jxrlib=1.1=h8ffe710_2
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kiwisolver=1.4.4=py39h2e07f2f_0
- krb5=1.19.3=h1176d77_0
- lcms2=2.12=h2a16943_0
- lerc=3.0=h0e60522_0
- libaec=1.0.6=h39d44d4_0
- libavif=0.10.1=h8ffe710_1
- libblas=3.9.0=12_win64_mkl
- libbrotlicommon=1.0.9=h8ffe710_7
- libbrotlidec=1.0.9=h8ffe710_7
- libbrotlienc=1.0.9=h8ffe710_7
- libcblas=3.9.0=12_win64_mkl
- libclang=11.1.0=default_h5c34c98_1
- libcurl=7.83.1=h789b8ee_0
- libdeflate=1.12=h8ffe710_0
- libexpat=2.5.0=h63175ca_1
- libiconv=1.17=h8ffe710_0
- libitk=5.2.0=hac70a04_4
- libitk-devel=5.2.0=h3bb2308_4
- liblapack=3.9.0=12_win64_mkl
- liblapacke=3.9.0=12_win64_mkl
- libnetcdf=4.8.1=nompi_h1cc8e9d_102
- libogg=1.3.4=h8ffe710_1
- libopencv=4.5.1=py39h27d8466_0
- libpng=1.6.37=h1d00b33_4
- libprotobuf=3.17.2=h7755175_1
- libssh2=1.10.0=h680486a_3
- libtheora=1.1.1=h8d14728_1005
- libtiff=4.4.0=h2ed3b44_1
- libwebp-base=1.2.4=h8ffe710_0
- libxcb=1.13=hcd874cb_1004
- libxml2=2.10.1=hf5bbc77_0
- libzip=1.9.2=hfed4ece_1
- libzlib=1.2.12=h8ffe710_2
- libzopfli=1.0.3=h0e60522_0
- llvmlite=0.39.0=py39ha0cd8c8_1
- locket=1.0.0=pyhd8ed1ab_0
- loguru=0.7.0=py39hcbf5309_0
- lz4-c=1.9.3=h8ffe710_1
- m2w64-gcc-libgfortran=5.3.0=6
- m2w64-gcc-libs=5.3.0=7
- m2w64-gcc-libs-core=5.3.0=7
- m2w64-gmp=6.1.0=2
- m2w64-libwinpthread-git=5.0.0.4634.697f757=2
- markdown=3.4.3=pyhd8ed1ab_0
- markupsafe=2.1.2=py39ha55989b_0
- matplotlib=3.7.1=py39hcbf5309_0
- matplotlib-base=3.7.1=py39hf11a4ad_1
- medpy=0.4.0=py39h6a716af_1
- mkl=2021.4.0=h0e2418a_729
- mkl-service=2.4.0=py39h6b0492b_0
- msys2-conda-epoch=20160418=1
- multidict=6.0.4=py39ha55989b_0
- munkres=1.1.4=pyh9f0ad1d_0
- networkx=3.1=pyhd8ed1ab_0
- nibabel=5.1.0=py39hcbf5309_2
- numba=0.56.3=py39hf11a4ad_0
- numexpr=2.7.3=py39h2e25243_2
- numpy=1.21.5=py39h6331f09_1
- numpy-stl=2.17.1=py39h5d4886f_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- opencv=4.5.1=py39hcbf5309_0
- openjpeg=2.5.0=hc9384bd_1
- openssl=1.1.1t=h2bbff1b_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=23.1=pyhd8ed1ab_0
- pandas=1.4.3=py39h2e25243_0
- partd=1.4.0=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pillow=9.2.0=py39hcef8f5f_2
- pip=23.0.1=py39haa95532_0
- proj=9.0.0=h1cfcee9_1
- protobuf=3.17.2=py39h415ef7b_0
- pthread-stubs=0.4=hcd874cb_1001
- pugixml=1.11.4=h0e60522_0
- py-opencv=4.5.1=py39h832f523_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pydicom=2.3.1=pyh1a96a4e_0
- pyjwt=2.7.0=pyhd8ed1ab_0
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.12.3=py39hb0d2dfa_4
- pysocks=1.7.1=pyh0701188_6
- pytables=3.7.0=py39hbcfe41f_0
- python=3.9.16=h6244533_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=1.12=pyhd8ed1ab_1
- python-utils=3.5.2=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytz=2023.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.3.0=py39h5d4886f_1
- pyyaml=6.0=py39hb82d6ee_4
- qt=5.12.9=h5909a2a_4
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- scikit-image=0.19.2=py39h2e25243_0
- scikit-learn=1.1.2=py39hfd4428b_0
- scipy=1.9.3=py39h321e85e_1
- setuptools=66.0.0=py39haa95532_0
- simpleitk=2.1.0=py39hc8d2e25_1
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=h82413e6_1
- sqlite=3.41.2=h2bbff1b_0
- statsmodels=0.13.2=py39h5d4886f_0
- tbb=2021.5.0=h2d74725_1
- tbb-devel=2021.5.0=h2d74725_1
- tensorboard=2.6.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.1=py39hcbf5309_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.6.0=gpu_py39he88c5ba_0
- tensorflow-base=2.6.0=gpu_py39hb3da07e_0
- tensorflow-estimator=2.6.0=pyh7b7c402_0
- tensorflow-gpu=2.6.0=h17022bd_0
- termcolor=2.3.0=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tifffile=2021.7.2=pyhd8ed1ab_0
- tk=8.6.12=h8ffe710_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.2=py39hb82d6ee_0
- tqdm=4.65.0=pyhd8ed1ab_1
- typing-extensions=4.6.0=hd8ed1ab_0
- typing_extensions=4.6.0=pyha770c72_0
- tzdata=2023c=h04d1e81_0
- ucrt=10.0.22621.0=h57928b3_0
- unicodedata2=14.0.0=py39hb82d6ee_1
- urllib3=2.0.2=pyhd8ed1ab_0
- utfcpp=3.2.3=h57928b3_0
- vc=14.2=h21ff451_1
- vc14_runtime=14.34.31931=h5081d32_16
- vs2015_runtime=14.34.31931=hed1258a_16
- vtk=9.1.0=qt_py39h1ab545e_208
- werkzeug=2.3.4=pyhd8ed1ab_0
- wheel=0.35.1=pyh9f0ad1d_0
- win32_setctime=1.1.0=pyhd8ed1ab_0
- win_inet_pton=1.1.0=pyhd8ed1ab_6
- wrapt=1.15.0=py39ha55989b_0
- xorg-libxau=1.0.11=hcd874cb_0
- xorg-libxdmcp=1.1.3=hcd874cb_0
- xz=5.2.6=h8d14728_0
- yaml=0.2.5=h8ffe710_2
- yarl=1.9.1=py39ha55989b_0
- zfp=0.5.5=h0e60522_8
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.12=h8ffe710_2
- zlib-ng=2.0.6=h8ffe710_0
- zstd=1.5.2=h6255e5f_4
- pip:
- itk-core==5.2.0
- itk-filtering==5.2.0
- itk-numerics==5.2.0
- itk-registration==5.2.0
- pyqt5-sip==4.19.18
- pyqtchart==5.12
- pyqtwebengine==5.12.1
- biomedisa