pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="http://maven.apache.org/POM/4.0.0"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>nl.lumc.sasc.test</groupId>
    <artifactId>Biopet-FunctionalTests</artifactId>
    <packaging>pom</packaging>
    <version>0.6.0-SNAPSHOT</version>
    <modules>
        <module>BamMetrics</module>
        <module>Basty</module>
        <module>Carp</module>
        <module>Common</module>
        <module>Flexiprep</module>
        <module>Gears</module>
        <module>Gentrap</module>
        <module>Kopisu</module>
        <module>Mapping</module>
        <module>Shiva</module>
        <module>TinyCap</module>
        <module>Toucan</module>
        <module>DownloadGenomes</module>
    </modules>

    <properties>
        <scalaVersion>2.11.4</scalaVersion>
        <scalaFMTVersion>0.6.8</scalaFMTVersion>
    </properties>

    <build>
        <sourceDirectory>${basedir}/src/main/scala</sourceDirectory>
        <testSourceDirectory>${basedir}/src/test/scala</testSourceDirectory>
        <testResources>
            <testResource>
                <directory>${basedir}/src/test/resources</directory>
                <includes>
                    <include>**/*</include>
                </includes>
            </testResource>
        </testResources>
        <resources>
            <resource>
                <directory>${basedir}/src/main/resources</directory>
                <includes>
                    <include>**/*</include>
                </includes>
            </resource>
        </resources>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.18.1</version>
                <configuration>
                    <forkCount>18</forkCount>
                    <argLine>-Xmx200m</argLine>
                    <!--<reuseForks>false</reuseForks>-->
                    <workingDirectory>${project.build.directory}</workingDirectory>
                    <runOrder>balanced</runOrder>
                </configuration>
            </plugin>
            <plugin>
                <groupId>net.alchim31.maven</groupId>
                <artifactId>scala-maven-plugin</artifactId>
                <version>3.2.0</version>
                <executions>
                    <execution>
                        <id>scala-compile</id>
                        <goals>
                            <goal>compile</goal>
                            <goal>testCompile</goal>
                        </goals>
                        <configuration>
                            <args>
                                <arg>-dependencyfile</arg>
                                <arg>${project.build.directory}/.scala_dependencies</arg>
                                <arg>-deprecation</arg>
                                <arg>-feature</arg>
                            </args>
                            <!--<scalaVersion>2.11.4</scalaVersion>-->
                        </configuration>
                    </execution>
                </executions>
                <!-- ... (see other usage or goals for details) ... -->
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.5</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <archive>
                        <manifest>
                            <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.3.2</version>
                <configuration>
                    <showDeprecation>true</showDeprecation>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.antipathy</groupId>
                <artifactId>mvn-scalafmt</artifactId>
                <version>0.1</version>
                <inherited>false</inherited>
                <configuration>
                    <configLocation>${project.basedir}/.scalafmt.conf</configLocation>
                </configuration>
                <executions>
                    <execution>
                        <phase>validate</phase>
                        <goals>
                            <goal>format</goal>
                        </goals>
                    </execution>
                </executions>
                <dependencies>
                    <!-- https://mvnrepository.com/artifact/com.geirsson/scalafmt-core_2.11 -->
                    <dependency>
                        <groupId>com.geirsson</groupId>
                        <artifactId>scalafmt-core_2.11</artifactId>
                        <version>${scalaFMTVersion}</version>
                    </dependency>
                    <!-- https://mvnrepository.com/artifact/com.geirsson/scalafmt-cli_2.11 -->
                    <dependency>
                        <groupId>com.geirsson</groupId>
                        <artifactId>scalafmt-cli_2.11</artifactId>
                        <version>${scalaFMTVersion}</version>
                    </dependency>
                </dependencies>
            </plugin>
        </plugins>
    </build>

</project>