Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Provide purls for published contexts? #317

Closed
matentzn opened this issue Feb 14, 2022 · 4 comments
Closed

Provide purls for published contexts? #317

matentzn opened this issue Feb 14, 2022 · 4 comments
Labels
good first issue Good for newcomers manuscript Issues that should be addressed before finishing the manuscript

Comments

@matentzn
Copy link
Collaborator

matentzn commented Feb 14, 2022

One of my builds just broke because it dependent on obo_synonyms.context.jsonld and it recently changed locations. Maybe w3id.org?

Old link: https://raw.githubusercontent.com/bioregistry/bioregistry/main/docs/_data/contexts/obo_synonyms.context.json
New Link: https://github.com/biopragmatics/bioregistry/raw/main/exports/contexts/obo_synonyms.context.jsonld

@cthoyt cthoyt added manuscript Issues that should be addressed before finishing the manuscript good first issue Good for newcomers labels Feb 14, 2022
@cthoyt
Copy link
Member

cthoyt commented Feb 14, 2022

Strange, I don't think they have moved. Either way, this seems like a nice idea. I've labeled it as "manuscript" and "good first issue" since I think anyone can set this up for us, then potentially write a paragraph about why you'd want to refer to resources this way to go in the manuscript (and then be a co-author)

@matentzn I already have a job for you and @hrshdhgd to write a paragraph on SSSOM to go in the paper so you don't necessarily have to be responsible for this, but if you want to get someone more junior to learn about this in a practical setting then feel free to recommend someone to take care of this

@matentzn
Copy link
Collaborator Author

Strange, I don't think they have moved.

Used to be here:
https://raw.githubusercontent.com/bioregistry/bioregistry/main/docs/_data/contexts/obo_synonyms.context.json

if you want to get someone more junior to learn about this in a practical setting then feel free to recommend someone to take care of this

We can take care of this - I have done it many times and it will take a few seconds, but it kinda is your resource; if you want I can create the PR for you, then you should own it though :P

Anything you need @cthoyt, as long as we know plenty of time in advance - just add it as an issue on sssom-py and we will pencil it in.

@cthoyt
Copy link
Member

cthoyt commented Feb 14, 2022

You're right, they did move, but this was long time ago and I forgot 😅 (sorry). I will think about how I want to proceed (and let you into the google doc for the bioregistry paper ASAP)

@cthoyt
Copy link
Member

cthoyt commented Apr 10, 2024

@cthoyt cthoyt closed this as completed Apr 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
good first issue Good for newcomers manuscript Issues that should be addressed before finishing the manuscript
Projects
None yet
Development

No branches or pull requests

2 participants