Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Expose static and steady-state analyses through SED-ML #45

Open
6 tasks
jonrkarr opened this issue Jan 4, 2021 · 1 comment
Open
6 tasks

Expose static and steady-state analyses through SED-ML #45

jonrkarr opened this issue Jan 4, 2021 · 1 comment
Labels
enhancement New feature or request

Comments

@jonrkarr
Copy link
Member

jonrkarr commented Jan 4, 2021

Such as

  • Steady-State Analysis
  • Stoichiometric State Analysis
  • MCA
  • Lyapunov Exponents
  • Time Scale Separation
  • Sensitivity Analysis

Todo

  • Map each COPASI method/parameter to a KiSAO term (e.g., build a table of the correspondence between COPASI and KiSAO)
    • Add additional KiSAO terms as needed
  • Add the above algorithms to the curation of COPASI
  • Expand map of KiSAO terms to COPASI methods
  • Curate a few test cases (SED-ML files)
  • Add unit tests involving these test cases
@jonrkarr
Copy link
Member Author

jonrkarr commented May 5, 2021

@fbergmann @shoops here's what needs to be done to expand COPASI to additional methods. Can you help with this?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Development

No branches or pull requests

1 participant