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Adding more tutorials #616

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padix-key opened this issue Jun 29, 2024 · 3 comments
Open
9 tasks

Adding more tutorials #616

padix-key opened this issue Jun 29, 2024 · 3 comments

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@padix-key
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padix-key commented Jun 29, 2024

The new documentation #552 contains also a revamped tutorial. However, some important sets of functionalities miss a tutorial:

  • tantan application interface: tutorial/application/tantan
  • sra-tools application interface: tutorial/application/sra
  • ViennaRNA application interface: tutorial/application/viennarna
  • Uniprot database: tutorial/database/uniprot
  • PubChem database: tutorial/database/pubchem
  • Sequence profiles: tutorial/sequence/profiles
  • Chain, residue and molecule utilities: tutorial/structure/segments
  • Nucleotide structure analysis (base pairs, dot-bracket): tutorial/structure/nucleotide
  • MOL and SDF format: part of tutorial/structure/io

Note the new scope for tutorials: https://kunzmann.uber.space/latest/contribution/documentation.html#documentation-structure

@padix-key
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padix-key commented Jun 29, 2024

As you are the authors of the respective functionality:

@t0mdavid-m Would you like to write the tutorial/structure/nucleotide and/or tutorial/application/viennarna tutorial?

@MaxGreil Would you like to write the tutorial/database/uniprot and/or tutorial/sequence/profiles tutorial?

@t0mdavid-m
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t0mdavid-m commented Jun 29, 2024

Happy to do both the structure/nucleotide and application/viennarna tutorials!

@padix-key
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As part of enabling alignments for sequence profile via PositionalSequence (#655), I will also add the tutorial/sequence/profiles tutorial

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