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DESCRIPTION
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Package: BOLDconnectR
Title: Retrieve, Transform and Analyze the Barcode of Life Data Systems
Data
Version: 1.0.0
Authors@R: c(
person("Sameer", "Padhye", , "spadhye@uoguelph.ca", role = c("aut", "cre")),
person("Liliana", "Ballesteros-Mejia", , "cballest@uoguelph.ca", role = "aut"),
person("Sujeevan", "Ratnasingham", , "sratnasi@uoguelph.ca", role = "aut")
)
Maintainer: Sameer Padhye <spadhye@uoguelph.ca>
Description: Facilitate retrieval, transformation and analysis of the data
from the Barcode of Life Data Systems (BOLD) database <http:https://boldsystems.org/>.
This package allows both public and private user data to be easily downloaded easily into the R
environment using a variety of inputs such as: processids, sampleids,
taxonomy, geography etc. It provides the functionality to convert data
into formats compatible with other R-packages and third-party tools,
as well as analysis functions for biodiversity, clustering and mapping.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends:
R (>= 4.0.0)
biocViews:
Imports:
ape(>= 5.5),
BAT(>= 2.0),
data.table(>= 1.13),
dplyr(>= 1.0.1),
ggplot2(>= 3.3.2),
httr(>= 1.4.2),
jsonlite(>= 1.7),
maps(>= 3.3),
methods,
reshape2,
rnaturalearth,
sf(>= 0.9.4),
skimr(>= 2.1.2),
tidyr(>= 1.1.1),
utils,
vegan(>= 2.5.7)
Suggests:
Biostrings,
BiocManager,
msa
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2