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This is entirely left to GDAL/Proj, if the metadata on the DEM files is correct and Proj handles the translation to geocent / ECEF, then you are fine.
You can see in the download script for the notebooks that I add the explicit vertical reference EPSG:5773 to the command line in the pre-process step, as the DEM uses EGM96 heights but doesn't declare it: gdalwarp -r bilinear -s_srs EPSG:4326+5773 ... Then GDAL converts the DEM to WGS84 ellipsoid heights and add correct metadata.
What is the vertical reference for the DEMs? Most DEMs are MSL, but the SAR computations require WGS84. Are you applying EGM 96 or 2008 to the DEM?
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