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<!DOCTYPE html>
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<title>Boutiques: A descriptive command-line framework</title>
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<img src="./images/logo.png" height="30px" width="28px" style="display:inline" alt="Logo"> Boutiques</a>
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<a class="nav-link" href="https://github.com/boutiques/boutiques">Code</a>
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<a class="nav-link" href="https://nbviewer.jupyter.org/github/boutiques/tutorial/blob/master/notebooks/boutiques-tutorial.ipynb">Getting Started</a>
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<a class="nav-link" href="https://zenodo.org/search?page=1&size=20&keywords=Boutiques&keywords=schema&keywords=version&file_type=json&type=software">Supported Tools</a>
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<h1 style="display:inline;vertical-align:middle;font-size:40pt">Boutiques</h1>
<br/> <br/> <br/>
<p>A descriptive command-line framework automating tool validation and deployment.</p>
<p><a class="btn btn-lg btn-primary" href="https://github.com/boutiques/boutiques/" role="button">» Fork us on Github!</a></p>
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<h3 class="featurette-heading">Create your descriptor. <span class="text-muted">Scalably deploy.</span></h3>
<p class="lead" style="text-align:justify">Boutiques is a tool to automatically publish, integrate, and execute applications across computational platforms. Boutiques applications are summarized in a simple yet rich JSON description, and enable the simulation, validation, evaluation, and application-specific monitoring of command-line tools.</p>
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<img class="featurette-image img-fluid mx-auto" src="./images/boutiquesfig1.png" alt="boutiques paper figure 1">
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<h2 class="featurette-heading">Portable and scalable <span class="text-muted">analysis.</span></h2>
<p class="lead" style="text-align:justify">Boutiques leverages Linux container engines such as Docker and Singularity to deploy tools across platforms without any installation. Computational ecosystems such as <a href="http://cbrain.mcgill.ca">CBRAIN</a> or <a href="http://vip.creatis.insa-lyon.fr">VIP</a> make use of Boutiques descriptors to import and manage deployment of pipelines at scale.</p>
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<h2>Descriptor Schema</h2>
<p>Boutiques is defined by a JSON schema, meaning that tools described in Boutiques can be flexibly interpretted and edited, regardless of the infrastructure. The schema defines inputs, outputs, error codes, input-groups, containers, and more.</p>
<p><a class="btn btn-secondary" href="https://github.com/boutiques/boutiques/blob/master/boutiques/schema/descriptor.schema.json" role="button">View schema »</a></p>
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<h2>Python Package</h2>
<p>You can simply install the Boutiques package with <code>pip install boutiques</code>. This package enables validation,simulation, execution, publishing, and the evaluation of descriptors and their invocations from a simple command-line tool, <code>bosh</code>.</p>
<p><a class="btn btn-secondary" href="https://github.com/boutiques/boutiques/blob/master/README.md" role="button">View package »</a></p>
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<h2>Zenodo Repository</h2>
<p>Many descriptors are available through the Zenodo resource-sharing portal. <code>bosh publish</code> command enables you to push your descriptor for public consumption, as well.</p>
<p><a class="btn btn-secondary" href="https://zenodo.org/search?page=1&size=20&keywords=Boutiques&keywords=schema&keywords=version&file_type=json&type=software" role="button">Browse Zenodo »</a></p>
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<h2 >Get involved!</h2>
<p class="lead" style="text-align:justify">The Boutiques schema and tools are under active development, and new contributors are always welcome. Be sure to check out the <a href="https://github.com/boutiques/boutiques/blob/master/CONTRIBUTING.md">contribution guide</a> and get started on a <a href="https://github.com/boutiques/boutiques/issues?q=is%3Aissue+is%3Aopen+label%3Abeginner">beginner issue</a>.</p> <br/>
<h2>References</h2>
<p class="lead" style="text-align:justify">Please cite Boutiques with the following:</p>
<ul>
<li> Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, Rémi Bernard, Axel Bonnet, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R.G. Guttmann, Valérie Hayot-Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Eienne Rousseau, Alan C. Evans, "Boutiques: a flexible framework for automated application integration in computing platforms." arXiv preprint <a href="https://arxiv.org/abs/1711.09713">arXiv:1711.09713 (2017)</a>.
<li> Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Rafael Ferreira da Silva, & Marc-Etienne Rousseau. boutiques/boutiques. <a href="https://doi.org/10.5281/zenodo.1098558"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.1098558.svg" alt="DOI"></a>
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