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blastn_aligments.html
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<html><body>
<style>td { border-bottom: 1px solid black;} img { height: 397px; }</style>
<table>
<tr><td>C1<br/>name</td><td>C2<br/>name</td><td>qcovs</td><td>qcovus</td><td></td></tr>
<tr><td>SaPI1 (cGI2)|211|176<br/>Staphylococcus aureus subspecies aureus</td><td>SaPI1 (cGI1)|210|175<br/>Staphylococcus aureus subspecies aureus</td><td>84</td><td>84</td><td><img src="alignments/176-175.xfma.png" /></td></tr>
<tr><td>SaPI1 (cGI2)|211|176<br/>Staphylococcus aureus subspecies aureus</td><td>SaPIn1 (cGI2)|308|264<br/>Staphylococcus aureus subsp. aureus N315</td><td>34</td><td>34</td><td><img src="alignments/176-264.xfma.png" /></td></tr>
<tr><td>SaPI1 (cGI2)|211|176<br/>Staphylococcus aureus subspecies aureus</td><td>SaPIn1 (cGI1)|301|257<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>34</td><td>34</td><td><img src="alignments/176-257.xfma.png" /></td></tr>
<tr><td>SaPI1 (cGI2)|211|176<br/>Staphylococcus aureus subspecies aureus</td><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>34</td><td>34</td><td><img src="alignments/176-178.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI1)|39|39<br/>Enterococcus faecium E1162</td><td>esp PAI (cGI3)|41|41<br/>Enterococcus faecium U0317</td><td>89</td><td>88</td><td><img src="alignments/39-41.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI1)|39|39<br/>Enterococcus faecium E1162</td><td>esp PAI (cGI2)|40|40<br/>Enterococcus faecium E1679</td><td>91</td><td>91</td><td><img src="alignments/39-40.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI2)|40|40<br/>Enterococcus faecium E1679</td><td>esp PAI (cGI3)|41|41<br/>Enterococcus faecium U0317</td><td>62</td><td>60</td><td><img src="alignments/40-41.xfma.png" /></td></tr>
<tr><td>SF370.3|419|364<br/>Streptococcus pyogenes M1 GAS</td><td>370.3|320|276<br/>Streptococcus pyogenes M1 GAS</td><td>100</td><td>100</td><td><img src="alignments/364-276.xfma.png" /></td></tr>
<tr><td>SF370.3|419|364<br/>Streptococcus pyogenes M1 GAS</td><td>370.3-like|297|253<br/>Streptococcus pyogenes MGAS8232</td><td>92</td><td>92</td><td><img src="alignments/364-253.xfma.png" /></td></tr>
<tr><td>SF370.3|419|364<br/>Streptococcus pyogenes M1 GAS</td><td>315.3 (cGI1)|324|280<br/>Streptococcus pyogenes MGAS315</td><td>79</td><td>79</td><td><img src="alignments/364-280.xfma.png" /></td></tr>
<tr><td>SF370.3|419|364<br/>Streptococcus pyogenes M1 GAS</td><td>315.3 (cGI2)|422|367<br/>Streptococcus pyogenes MGAS315</td><td>79</td><td>79</td><td><img src="alignments/364-367.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>370.1|318|274<br/>Streptococcus pyogenes M1 GAS</td><td>100</td><td>100</td><td><img src="alignments/362-274.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>315.4 (cGI1)|325|281<br/>Streptococcus pyogenes MGAS315</td><td>52</td><td>52</td><td><img src="alignments/362-281.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>52</td><td>52</td><td><img src="alignments/362-368.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>52</td><td>52</td><td><img src="alignments/362-331.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>50</td><td>50</td><td><img src="alignments/362-355.xfma.png" /></td></tr>
<tr><td>SF370.1|417|362<br/>Streptococcus pyogenes M1 GAS</td><td>sda|293|249<br/>Streptococcus pyogenes MGAS8232</td><td>53</td><td>53</td><td><img src="alignments/362-249.xfma.png" /></td></tr>
<tr><td>SF370.2|418|363<br/>Streptococcus pyogenes M1 GAS</td><td>370.2|319|275<br/>Streptococcus pyogenes M1 GAS</td><td>100</td><td>100</td><td><img src="alignments/363-275.xfma.png" /></td></tr>
<tr><td>SF370.2|418|363<br/>Streptococcus pyogenes M1 GAS</td><td>phi 6180.1|409|354<br/>Streptococcus pyogenes MGAS6180</td><td>57</td><td>57</td><td><img src="alignments/363-354.xfma.png" /></td></tr>
<tr><td>SF370.2|418|363<br/>Streptococcus pyogenes M1 GAS</td><td>speL|296|252<br/>Streptococcus pyogenes MGAS8232</td><td>56</td><td>56</td><td><img src="alignments/363-252.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>99</td><td>98</td><td><img src="alignments/160-217.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>55</td><td>39</td><td><img src="alignments/160-235.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>59</td><td>45</td><td><img src="alignments/160-230.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>52</td><td>40</td><td><img src="alignments/160-237.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>54</td><td>43</td><td><img src="alignments/160-240.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>46</td><td>38</td><td><img src="alignments/160-218.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>49</td><td>39</td><td><img src="alignments/160-212.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>45</td><td>31</td><td><img src="alignments/160-238.xfma.png" /></td></tr>
<tr><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>36</td><td>32</td><td><img src="alignments/160-166.xfma.png" /></td></tr>
<tr><td>SHI-1|206|171<br/>Shigella flexneri 2a str. 301</td><td>PAI-CFT073-serX|198|164<br/>Escherichia coli CFT073</td><td>31</td><td>31</td><td><img src="alignments/171-164.xfma.png" /></td></tr>
<tr><td>SHI-1|206|171<br/>Shigella flexneri 2a str. 301</td><td>PAI-CFT073-pheV|197|163<br/>Escherichia coli CFT073</td><td>41</td><td>41</td><td><img src="alignments/171-163.xfma.png" /></td></tr>
<tr><td>SHI-1|206|171<br/>Shigella flexneri 2a str. 301</td><td>PAI-CFT073-aspV|195|161<br/>Escherichia coli CFT073</td><td>31</td><td>31</td><td><img src="alignments/171-161.xfma.png" /></td></tr>
<tr><td>SHI-2|207|172<br/>Shigella flexneri 2a str. 301</td><td>PAI-CFT073-pheV|197|163<br/>Escherichia coli CFT073</td><td>56</td><td>50</td><td><img src="alignments/172-163.xfma.png" /></td></tr>
<tr><td>SHI-2|207|172<br/>Shigella flexneri 2a str. 301</td><td>SHI-3|208|173<br/>Shigella boydii 0-1392</td><td>36</td><td>36</td><td><img src="alignments/172-173.xfma.png" /></td></tr>
<tr><td>PI-1|393|338<br/>Streptococcus agalactiae 2603V/R</td><td>VI|400|345<br/>Streptococcus agalactiae NEM316</td><td>91</td><td>91</td><td><img src="alignments/338-345.xfma.png" /></td></tr>
<tr><td>315.3 (cGI2)|422|367<br/>Streptococcus pyogenes MGAS315</td><td>315.3 (cGI1)|324|280<br/>Streptococcus pyogenes MGAS315</td><td>100</td><td>100</td><td><img src="alignments/367-280.xfma.png" /></td></tr>
<tr><td>315.3 (cGI2)|422|367<br/>Streptococcus pyogenes MGAS315</td><td>370.3-like|297|253<br/>Streptococcus pyogenes MGAS8232</td><td>80</td><td>80</td><td><img src="alignments/367-253.xfma.png" /></td></tr>
<tr><td>315.3 (cGI2)|422|367<br/>Streptococcus pyogenes MGAS315</td><td>370.3|320|276<br/>Streptococcus pyogenes M1 GAS</td><td>77</td><td>77</td><td><img src="alignments/367-276.xfma.png" /></td></tr>
<tr><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>100</td><td>100</td><td><img src="alignments/368-331.xfma.png" /></td></tr>
<tr><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>315.4 (cGI1)|325|281<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/368-281.xfma.png" /></td></tr>
<tr><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>97</td><td>97</td><td><img src="alignments/368-355.xfma.png" /></td></tr>
<tr><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>370.1|318|274<br/>Streptococcus pyogenes M1 GAS</td><td>51</td><td>51</td><td><img src="alignments/368-274.xfma.png" /></td></tr>
<tr><td>315.4 (cGI2)|423|368<br/>Streptococcus pyogenes MGAS315</td><td>sda|293|249<br/>Streptococcus pyogenes MGAS8232</td><td>66</td><td>66</td><td><img src="alignments/368-249.xfma.png" /></td></tr>
<tr><td>315.5 (cGI2)|424|369<br/>Streptococcus pyogenes MGAS315</td><td>315.5 (cGI1)|326|282<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/369-282.xfma.png" /></td></tr>
<tr><td>315.5 (cGI2)|424|369<br/>Streptococcus pyogenes MGAS315</td><td>315.2 (cGI1)|323|279<br/>Streptococcus pyogenes MGAS315</td><td>38</td><td>38</td><td><img src="alignments/369-279.xfma.png" /></td></tr>
<tr><td>315.5 (cGI2)|424|369<br/>Streptococcus pyogenes MGAS315</td><td>315.2 (cGI2)|421|366<br/>Streptococcus pyogenes MGAS315</td><td>38</td><td>38</td><td><img src="alignments/369-366.xfma.png" /></td></tr>
<tr><td>315.6 (cGI2)|425|370<br/>Streptococcus pyogenes MGAS315</td><td>315.6 (cGI1)|327|283<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/370-283.xfma.png" /></td></tr>
<tr><td>315.1 (cGI2)|420|365<br/>Streptococcus pyogenes MGAS315</td><td>315.1 (cGI1)|322|278<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/365-278.xfma.png" /></td></tr>
<tr><td>315.1 (cGI2)|420|365<br/>Streptococcus pyogenes MGAS315</td><td>T12|294|250<br/>Streptococcus pyogenes MGAS8232</td><td>90</td><td>90</td><td><img src="alignments/365-250.xfma.png" /></td></tr>
<tr><td>315.2 (cGI2)|421|366<br/>Streptococcus pyogenes MGAS315</td><td>315.2 (cGI1)|323|279<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/366-279.xfma.png" /></td></tr>
<tr><td>315.2 (cGI2)|421|366<br/>Streptococcus pyogenes MGAS315</td><td>speC|295|251<br/>Streptococcus pyogenes MGAS8232</td><td>57</td><td>57</td><td><img src="alignments/366-251.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>47</td><td>47</td><td><img src="alignments/166-218.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>55</td><td>55</td><td><img src="alignments/166-240.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>40</td><td>40</td><td><img src="alignments/166-167.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>55</td><td>55</td><td><img src="alignments/166-230.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>58</td><td>58</td><td><img src="alignments/166-217.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>34</td><td>34</td><td><img src="alignments/166-211.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>31</td><td>31</td><td><img src="alignments/166-219.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>φ-CFT073-smpB|203|169<br/>Escherichia coli CFT073</td><td>33</td><td>33</td><td><img src="alignments/166-169.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>36</td><td>36</td><td><img src="alignments/166-212.xfma.png" /></td></tr>
<tr><td>φ-CFT073-potB|200|166<br/>Escherichia coli CFT073</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>39</td><td>39</td><td><img src="alignments/166-237.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>33</td><td>31</td><td><img src="alignments/167-234.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>33</td><td>31</td><td><img src="alignments/167-218.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>33</td><td>31</td><td><img src="alignments/167-240.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>33</td><td>31</td><td><img src="alignments/167-230.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>34</td><td>31</td><td><img src="alignments/167-217.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>34</td><td>31</td><td><img src="alignments/167-160.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-icdA|201|167<br/>Escherichia coli CFT073</td><td>Sp15|285|241<br/>Escherichia coli O157:H7 str. Sakai</td><td>34</td><td>31</td><td><img src="alignments/167-241.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-asnT(HPI)|202|168<br/>Escherichia coli CFT073</td><td>HPI|350|306<br/>Yersinia pestis KIM10+</td><td>97</td><td>97</td><td><img src="alignments/168-306.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-asnT(HPI)|202|168<br/>Escherichia coli CFT073</td><td>HPI-1|353|309<br/>Yersinia pestis CO92</td><td>97</td><td>97</td><td><img src="alignments/168-309.xfma.png" /></td></tr>
<tr><td>GI-CFT073-cobU|192|158<br/>Escherichia coli CFT073</td><td>PAI-CFT073-aspV|195|161<br/>Escherichia coli CFT073</td><td>47</td><td>47</td><td><img src="alignments/158-161.xfma.png" /></td></tr>
<tr><td>φ-CFT073-smpB|203|169<br/>Escherichia coli CFT073</td><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>43</td><td>43</td><td><img src="alignments/169-234.xfma.png" /></td></tr>
<tr><td>φ-CFT073-smpB|203|169<br/>Escherichia coli CFT073</td><td>CP-933X|259|215<br/>Escherichia coli O157:H7 str. EDL933</td><td>36</td><td>36</td><td><img src="alignments/169-215.xfma.png" /></td></tr>
<tr><td>φ-CFT073-smpB|203|169<br/>Escherichia coli CFT073</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>37</td><td>37</td><td><img src="alignments/169-237.xfma.png" /></td></tr>
<tr><td>PAI-CFT073-pheU|196|162<br/>Escherichia coli CFT073</td><td>PAI-CFT073-pheV|197|163<br/>Escherichia coli CFT073</td><td>42</td><td>35</td><td><img src="alignments/162-163.xfma.png" /></td></tr>
<tr><td>φ-CFT073-b0847|199|165<br/>Escherichia coli CFT073</td><td>fels-2|346|302<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. LT2</td><td>66</td><td>66</td><td><img src="alignments/165-302.xfma.png" /></td></tr>
<tr><td>φ-CFT073-b0847|199|165<br/>Escherichia coli CFT073</td><td>SPI-7 (cGI2)|334|290<br/>Salmonella enterica subsp. enterica serovar Typhi str. CT18</td><td>61</td><td>61</td><td><img src="alignments/165-290.xfma.png" /></td></tr>
<tr><td>VVI-3|59|59<br/>Vibrio vulnificus CMCP6</td><td>VVI-VII|54|54<br/>Vibrio vulnificus YJ016</td><td>59</td><td>59</td><td><img src="alignments/59-54.xfma.png" /></td></tr>
<tr><td>LEE (cGI1)|251|207<br/>Atypical enteropathogenic Escherichia coli</td><td>LEE (cGI2)|252|208<br/>Escherichia coli O157:H7 str. EDL933</td><td>91</td><td>91</td><td><img src="alignments/207-208.xfma.png" /></td></tr>
<tr><td>LEE (cGI1)|251|207<br/>Atypical enteropathogenic Escherichia coli</td><td>SpLE4|268|224<br/>Escherichia coli O157:H7 str. Sakai</td><td>91</td><td>91</td><td><img src="alignments/207-224.xfma.png" /></td></tr>
<tr><td>PAGI-1|17|17<br/>Pseudomonas aeruginosa X24509</td><td>LESGI-4|29|29<br/>Pseudomonas aeruginosa LESB58</td><td>71</td><td>71</td><td><img src="alignments/17-29.xfma.png" /></td></tr>
<tr><td>SHI-3|208|173<br/>Shigella boydii 0-1392</td><td>PAI-CFT073-pheV|197|163<br/>Escherichia coli CFT073</td><td>70</td><td>58</td><td><img src="alignments/173-163.xfma.png" /></td></tr>
<tr><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>44</td><td>44</td><td><img src="alignments/11-1.xfma.png" /></td></tr>
<tr><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>44</td><td>44</td><td><img src="alignments/11-28.xfma.png" /></td></tr>
<tr><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>44</td><td>44</td><td><img src="alignments/11-435.xfma.png" /></td></tr>
<tr><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>32</td><td>32</td><td><img src="alignments/11-31.xfma.png" /></td></tr>
<tr><td>A118 (cGI2)|291|247<br/>Listeria monocytogenes WSLC1001</td><td>A118 (cGI1)|94|87<br/>Listeria monocytogenes EGD-e</td><td>66</td><td>66</td><td><img src="alignments/247-87.xfma.png" /></td></tr>
<tr><td>A118 (cGI2)|291|247<br/>Listeria monocytogenes WSLC1001</td><td>A500|93|86<br/>Listeria monocytogenes WSLC1042</td><td>45</td><td>45</td><td><img src="alignments/247-86.xfma.png" /></td></tr>
<tr><td>PSA|92|85<br/>Listeria monocytogenes WSLC1042</td><td>B025|91|84<br/>Listeria ivanovii WSLC3009</td><td>30</td><td>30</td><td><img src="alignments/85-84.xfma.png" /></td></tr>
<tr><td>VIII|402|347<br/>Streptococcus agalactiae NEM316</td><td>VII|401|346<br/>Streptococcus agalactiae NEM316</td><td>100</td><td>100</td><td><img src="alignments/347-346.xfma.png" /></td></tr>
<tr><td>VIII|402|347<br/>Streptococcus agalactiae NEM316</td><td>III|397|342<br/>Streptococcus agalactiae NEM316</td><td>100</td><td>100</td><td><img src="alignments/347-342.xfma.png" /></td></tr>
<tr><td>III|397|342<br/>Streptococcus agalactiae NEM316</td><td>VII|401|346<br/>Streptococcus agalactiae NEM316</td><td>99</td><td>99</td><td><img src="alignments/342-346.xfma.png" /></td></tr>
<tr><td>IV|398|343<br/>Streptococcus agalactiae NEM316</td><td>RD2|413|358<br/>Streptococcus pyogenes MGAS6180</td><td>57</td><td>53</td><td><img src="alignments/343-358.xfma.png" /></td></tr>
<tr><td>V|399|344<br/>Streptococcus agalactiae NEM316</td><td>lambdaSa1|314|270<br/>Streptococcus agalactiae 2603V/R</td><td>100</td><td>100</td><td><img src="alignments/344-270.xfma.png" /></td></tr>
<tr><td>BcenGI1|105|98<br/>Burkholderia cenocepacia J2315</td><td>phiK96243|106|99<br/>Burkholderia pseudomallei K96243</td><td>35</td><td>35</td><td><img src="alignments/98-99.xfma.png" /></td></tr>
<tr><td>SGI-3 (cGI2)|503|444<br/>Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3841</td><td>SGI-4 (cGI4)|174|146<br/>Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain USDA15WA-1</td><td>99</td><td>99</td><td><img src="alignments/444-146.xfma.png" /></td></tr>
<tr><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>315.4 (cGI1)|325|281<br/>Streptococcus pyogenes MGAS315</td><td>99</td><td>99</td><td><img src="alignments/331-281.xfma.png" /></td></tr>
<tr><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>97</td><td>97</td><td><img src="alignments/331-355.xfma.png" /></td></tr>
<tr><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>370.1|318|274<br/>Streptococcus pyogenes M1 GAS</td><td>51</td><td>51</td><td><img src="alignments/331-274.xfma.png" /></td></tr>
<tr><td>phi NIH1.1|386|331<br/>S. pyogenes NIH1</td><td>sda|293|249<br/>Streptococcus pyogenes MGAS8232</td><td>66</td><td>66</td><td><img src="alignments/331-249.xfma.png" /></td></tr>
<tr><td>VGJphi_phage|356|311<br/>Vibrio cholerae SG25-1</td><td>VEJphi_phage|357|312<br/>Vibrio cholerae MO45</td><td>90</td><td>90</td><td><img src="alignments/311-312.xfma.png" /></td></tr>
<tr><td>VGJphi_phage|356|311<br/>Vibrio cholerae SG25-1</td><td>fs1|364|319<br/>Vibrio cholerae AL-4450</td><td>82</td><td>82</td><td><img src="alignments/311-319.xfma.png" /></td></tr>
<tr><td>pKLC102|19|19<br/>Pseudomonas aeruginosa clone C</td><td>PAGI-5|2|2<br/>Pseudomonas aeruginosa PSE9</td><td>69</td><td>69</td><td><img src="alignments/19-2.xfma.png" /></td></tr>
<tr><td>pKLC102|19|19<br/>Pseudomonas aeruginosa clone C</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>31</td><td>31</td><td><img src="alignments/19-14.xfma.png" /></td></tr>
<tr><td>pKLC102|19|19<br/>Pseudomonas aeruginosa clone C</td><td>PAPI-1|9|9<br/>Pseudomonas aeruginosa PA14</td><td>68</td><td>68</td><td><img src="alignments/19-9.xfma.png" /></td></tr>
<tr><td>pKLC102|19|19<br/>Pseudomonas aeruginosa clone C</td><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>68</td><td>68</td><td><img src="alignments/19-442.xfma.png" /></td></tr>
<tr><td>PAGI-4|18|18<br/>Pseudomonas aeruginosa clone C</td><td>DK2_GI7|497|438<br/>Pseudomonas aeruginosa DK2</td><td>37</td><td>37</td><td><img src="alignments/18-438.xfma.png" /></td></tr>
<tr><td>PAGI-4|18|18<br/>Pseudomonas aeruginosa clone C</td><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>30</td><td>30</td><td><img src="alignments/18-442.xfma.png" /></td></tr>
<tr><td>PAGI-4|18|18<br/>Pseudomonas aeruginosa clone C</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>30</td><td>30</td><td><img src="alignments/18-14.xfma.png" /></td></tr>
<tr><td>PAPI-1|9|9<br/>Pseudomonas aeruginosa PA14</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>32</td><td>32</td><td><img src="alignments/9-14.xfma.png" /></td></tr>
<tr><td>PAPI-1|9|9<br/>Pseudomonas aeruginosa PA14</td><td>PAGI-5|2|2<br/>Pseudomonas aeruginosa PSE9</td><td>63</td><td>62</td><td><img src="alignments/9-2.xfma.png" /></td></tr>
<tr><td>PAPI-1|9|9<br/>Pseudomonas aeruginosa PA14</td><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>63</td><td>62</td><td><img src="alignments/9-442.xfma.png" /></td></tr>
<tr><td>PAPI-2|10|10<br/>Pseudomonas aeruginosa PA14</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>62</td><td>62</td><td><img src="alignments/10-14.xfma.png" /></td></tr>
<tr><td>PAPI-2|10|10<br/>Pseudomonas aeruginosa PA14</td><td>ExoU-C|16|16<br/>Pseudomonas aeruginosa X13273</td><td>31</td><td>31</td><td><img src="alignments/10-16.xfma.png" /></td></tr>
<tr><td>PAPI-2|10|10<br/>Pseudomonas aeruginosa PA14</td><td>ExoU-B|15|15<br/>Pseudomonas aeruginosa 19660</td><td>64</td><td>64</td><td><img src="alignments/10-15.xfma.png" /></td></tr>
<tr><td>PAPI-2|10|10<br/>Pseudomonas aeruginosa PA14</td><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>35</td><td>35</td><td><img src="alignments/10-442.xfma.png" /></td></tr>
<tr><td>PAPI-2|10|10<br/>Pseudomonas aeruginosa PA14</td><td>PAGI-5|2|2<br/>Pseudomonas aeruginosa PSE9</td><td>38</td><td>38</td><td><img src="alignments/10-2.xfma.png" /></td></tr>
<tr><td>esp_PAI (cGI2)|37|37<br/>Enterococcus faecium E300</td><td>esp PAI (cGI3)|41|41<br/>Enterococcus faecium U0317</td><td>100</td><td>100</td><td><img src="alignments/37-41.xfma.png" /></td></tr>
<tr><td>esp_PAI (cGI2)|37|37<br/>Enterococcus faecium E300</td><td>esp PAI (cGI1)|39|39<br/>Enterococcus faecium E1162</td><td>100</td><td>98</td><td><img src="alignments/37-39.xfma.png" /></td></tr>
<tr><td>esp_PAI (cGI2)|37|37<br/>Enterococcus faecium E300</td><td>esp PAI (cGI4)|43|43<br/>Enterococcus faecium Aus0004</td><td>100</td><td>93</td><td><img src="alignments/37-43.xfma.png" /></td></tr>
<tr><td>esp_PAI (cGI2)|37|37<br/>Enterococcus faecium E300</td><td>esp PAI (cGI2)|40|40<br/>Enterococcus faecium E1679</td><td>98</td><td>97</td><td><img src="alignments/37-40.xfma.png" /></td></tr>
<tr><td>esp_PAI (cGI2)|37|37<br/>Enterococcus faecium E300</td><td>esp_PAI (cGI1)|36|36<br/>Enterococcus faecalis MMH594</td><td>38</td><td>34</td><td><img src="alignments/37-36.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AGI1|460|401<br/>A. baumannii</td><td>43</td><td>43</td><td><img src="alignments/128-401.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>33</td><td>33</td><td><img src="alignments/128-393.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>35</td><td>35</td><td><img src="alignments/128-400.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>35</td><td>35</td><td><img src="alignments/128-389.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>35</td><td>35</td><td><img src="alignments/128-390.xfma.png" /></td></tr>
<tr><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>31</td><td>31</td><td><img src="alignments/128-392.xfma.png" /></td></tr>
<tr><td>KSF-1_phage|362|317<br/>Vibrio cholerae 55V71</td><td>VCY-phi|369|324<br/>V. cholerae 10E09PW02</td><td>41</td><td>41</td><td><img src="alignments/317-324.xfma.png" /></td></tr>
<tr><td>ϕSa2|227|183<br/>Staphylococcus aureus subsp. aureus MW2</td><td>phiSa2mu|313|269<br/>Staphylococcus aureus subsp. aureus MW2</td><td>96</td><td>96</td><td><img src="alignments/183-269.xfma.png" /></td></tr>
<tr><td>νSaβ2|222|182<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn3 (cGI1)|300|256<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>45</td><td>45</td><td><img src="alignments/182-256.xfma.png" /></td></tr>
<tr><td>νSaβ2|222|182<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn3 (cGI2)|307|263<br/>Staphylococcus aureus subsp. aureus N315</td><td>45</td><td>45</td><td><img src="alignments/182-263.xfma.png" /></td></tr>
<tr><td>ϕSa3|228|184<br/>Staphylococcus aureus subsp. aureus MW2</td><td>phiSa3mu (cGI2)|312|268<br/>Staphylococcus aureus subsp. aureus MW2</td><td>100</td><td>100</td><td><img src="alignments/184-268.xfma.png" /></td></tr>
<tr><td>ϕSa3|228|184<br/>Staphylococcus aureus subsp. aureus MW2</td><td>phiSa3mu (cGI1)|303|259<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>57</td><td>57</td><td><img src="alignments/184-259.xfma.png" /></td></tr>
<tr><td>ϕSa3|228|184<br/>Staphylococcus aureus subsp. aureus MW2</td><td>phiN315|309|265<br/>Staphylococcus aureus subsp. aureus N315</td><td>52</td><td>52</td><td><img src="alignments/184-265.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaGIm|302|258<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>31</td><td>31</td><td><img src="alignments/179-258.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPI1 (cGI2)|211|176<br/>Staphylococcus aureus subspecies aureus</td><td>31</td><td>31</td><td><img src="alignments/179-176.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>31</td><td>31</td><td><img src="alignments/179-178.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn1 (cGI2)|308|264<br/>Staphylococcus aureus subsp. aureus N315</td><td>31</td><td>31</td><td><img src="alignments/179-264.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPI1 (cGI1)|210|175<br/>Staphylococcus aureus subspecies aureus</td><td>31</td><td>31</td><td><img src="alignments/179-175.xfma.png" /></td></tr>
<tr><td>νSa4|218|179<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn1 (cGI1)|301|257<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>31</td><td>31</td><td><img src="alignments/179-257.xfma.png" /></td></tr>
<tr><td>νSaα2|220|180<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn2 (cGI2)|306|262<br/>Staphylococcus aureus subsp. aureus N315</td><td>65</td><td>63</td><td><img src="alignments/180-262.xfma.png" /></td></tr>
<tr><td>νSaα2|220|180<br/>Staphylococcus aureus subsp. aureus MW2</td><td>SaPIn2 (cGI1)|299|255<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>64</td><td>59</td><td><img src="alignments/180-255.xfma.png" /></td></tr>
<tr><td>νSaα3|221|181<br/>Staphylococcus aureus subsp. aureus MW2</td><td>vSa3mw|311|267<br/>Staphylococcus aureus subsp. aureus MW2</td><td>100</td><td>100</td><td><img src="alignments/181-267.xfma.png" /></td></tr>
<tr><td>MGIVvuTai1|74|74<br/>Vibrio vulnificus YJ016</td><td>VVI-III|49|49<br/>Vibrio vulnificus YJ016</td><td>99</td><td>99</td><td><img src="alignments/74-49.xfma.png" /></td></tr>
<tr><td>phiK96243|106|99<br/>Burkholderia pseudomallei K96243</td><td>GI15|123|116<br/>Burkholderia pseudomallei K96243</td><td>66</td><td>66</td><td><img src="alignments/99-116.xfma.png" /></td></tr>
<tr><td>RD1|414|359<br/>Streptococcus pyogenes MGAS6180</td><td>PPI-1 (cGI1)|316|272<br/>Streptococcus pneumoniae R6</td><td>31</td><td>31</td><td><img src="alignments/359-272.xfma.png" /></td></tr>
<tr><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>315.4 (cGI1)|325|281<br/>Streptococcus pyogenes MGAS315</td><td>96</td><td>96</td><td><img src="alignments/355-281.xfma.png" /></td></tr>
<tr><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>370.1|318|274<br/>Streptococcus pyogenes M1 GAS</td><td>48</td><td>48</td><td><img src="alignments/355-274.xfma.png" /></td></tr>
<tr><td>phi 6180.2|410|355<br/>Streptococcus pyogenes MGAS6180</td><td>sda|293|249<br/>Streptococcus pyogenes MGAS8232</td><td>65</td><td>65</td><td><img src="alignments/355-249.xfma.png" /></td></tr>
<tr><td>phi 6180.3|411|356<br/>Streptococcus pyogenes MGAS6180</td><td>370.4|321|277<br/>Streptococcus pyogenes M1 GAS</td><td>64</td><td>64</td><td><img src="alignments/356-277.xfma.png" /></td></tr>
<tr><td>phi 6180.1|409|354<br/>Streptococcus pyogenes MGAS6180</td><td>speL|296|252<br/>Streptococcus pyogenes MGAS8232</td><td>67</td><td>67</td><td><img src="alignments/354-252.xfma.png" /></td></tr>
<tr><td>phi 6180.1|409|354<br/>Streptococcus pyogenes MGAS6180</td><td>370.2|319|275<br/>Streptococcus pyogenes M1 GAS</td><td>53</td><td>53</td><td><img src="alignments/354-275.xfma.png" /></td></tr>
<tr><td>FSDR|486|427<br/>Campylobacter fetus subsp. fetus 82-40</td><td>VSDR|483|424<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>42</td><td>36</td><td><img src="alignments/427-424.xfma.png" /></td></tr>
<tr><td>FGI I|484|425<br/>Campylobacter fetus subsp. fetus 82-40</td><td>VGI IIIA-1|479|420<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>82</td><td>68</td><td><img src="alignments/425-420.xfma.png" /></td></tr>
<tr><td>FGI II|485|426<br/>Campylobacter fetus subsp. fetus 82-40</td><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>44</td><td>42</td><td><img src="alignments/426-418.xfma.png" /></td></tr>
<tr><td>FGI II|485|426<br/>Campylobacter fetus subsp. fetus 82-40</td><td>VGI IV|482|423<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>45</td><td>43</td><td><img src="alignments/426-423.xfma.png" /></td></tr>
<tr><td>CP5|467|408<br/>Acinetobacter baumannii ATCC 17978</td><td>vB_AbaS_LC1|471|412<br/>A. baumannii ATCC 19606</td><td>73</td><td>73</td><td><img src="alignments/408-412.xfma.png" /></td></tr>
<tr><td>CP9|468|409<br/>Acinetobacter baumannii ATCC 17978</td><td>Bphi-B1251|462|403<br/>A. baumannii YMC/09/02/B1251</td><td>55</td><td>55</td><td><img src="alignments/409-403.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>96</td><td>96</td><td><img src="alignments/390-393.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/390-400.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>81</td><td>72</td><td><img src="alignments/390-398.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>86</td><td>83</td><td><img src="alignments/390-395.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>84</td><td>81</td><td><img src="alignments/390-394.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>80</td><td>77</td><td><img src="alignments/390-397.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>88</td><td>88</td><td><img src="alignments/390-392.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>73</td><td>72</td><td><img src="alignments/390-387.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>85</td><td>85</td><td><img src="alignments/390-389.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>36</td><td>31</td><td><img src="alignments/390-413.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR7|445|386<br/>A. baumannii A92</td><td>40</td><td>31</td><td><img src="alignments/390-386.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>52</td><td>42</td><td><img src="alignments/390-385.xfma.png" /></td></tr>
<tr><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>37</td><td>33</td><td><img src="alignments/390-407.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR22|447|388<br/>Acinetobacter baumannii MDR-ZJ06</td><td>71</td><td>71</td><td><img src="alignments/391-388.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>53</td><td>53</td><td><img src="alignments/391-390.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>53</td><td>53</td><td><img src="alignments/391-393.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>53</td><td>53</td><td><img src="alignments/391-400.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>53</td><td>53</td><td><img src="alignments/391-395.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>53</td><td>53</td><td><img src="alignments/391-397.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>53</td><td>53</td><td><img src="alignments/391-394.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>53</td><td>53</td><td><img src="alignments/391-387.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>53</td><td>53</td><td><img src="alignments/391-392.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>40</td><td>40</td><td><img src="alignments/391-398.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>51</td><td>51</td><td><img src="alignments/391-385.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>51</td><td>51</td><td><img src="alignments/391-413.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>35</td><td>35</td><td><img src="alignments/391-389.xfma.png" /></td></tr>
<tr><td>AbaR4|450|391<br/>Acinetobacter baumannii AB0057</td><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>54</td><td>54</td><td><img src="alignments/391-405.xfma.png" /></td></tr>
<tr><td>AbaR22|447|388<br/>Acinetobacter baumannii MDR-ZJ06</td><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>67</td><td>45</td><td><img src="alignments/388-405.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>65</td><td>65</td><td><img src="alignments/435-28.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>88</td><td>88</td><td><img src="alignments/435-1.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>50</td><td>50</td><td><img src="alignments/435-31.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>42</td><td>42</td><td><img src="alignments/435-34.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>42</td><td>42</td><td><img src="alignments/435-33.xfma.png" /></td></tr>
<tr><td>DK2_GI4|494|435<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>42</td><td>42</td><td><img src="alignments/435-35.xfma.png" /></td></tr>
<tr><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>PAGI-5|2|2<br/>Pseudomonas aeruginosa PSE9</td><td>84</td><td>84</td><td><img src="alignments/442-2.xfma.png" /></td></tr>
<tr><td>DK2_GI11|501|442<br/>Pseudomonas aeruginosa DK2</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>37</td><td>37</td><td><img src="alignments/442-14.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI4)|43|43<br/>Enterococcus faecium Aus0004</td><td>esp PAI (cGI1)|39|39<br/>Enterococcus faecium E1162</td><td>100</td><td>100</td><td><img src="alignments/43-39.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI4)|43|43<br/>Enterococcus faecium Aus0004</td><td>esp PAI (cGI3)|41|41<br/>Enterococcus faecium U0317</td><td>100</td><td>99</td><td><img src="alignments/43-41.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI4)|43|43<br/>Enterococcus faecium Aus0004</td><td>esp PAI (cGI2)|40|40<br/>Enterococcus faecium E1679</td><td>98</td><td>96</td><td><img src="alignments/43-40.xfma.png" /></td></tr>
<tr><td>esp PAI (cGI4)|43|43<br/>Enterococcus faecium Aus0004</td><td>esp_PAI (cGI1)|36|36<br/>Enterococcus faecalis MMH594</td><td>35</td><td>33</td><td><img src="alignments/43-36.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>100</td><td>100</td><td><img src="alignments/413-397.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>100</td><td>100</td><td><img src="alignments/413-394.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>80</td><td>80</td><td><img src="alignments/413-398.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>100</td><td>100</td><td><img src="alignments/413-393.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>100</td><td>100</td><td><img src="alignments/413-395.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>100</td><td>100</td><td><img src="alignments/413-387.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>100</td><td>100</td><td><img src="alignments/413-392.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/413-400.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>86</td><td>86</td><td><img src="alignments/413-389.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>79</td><td>79</td><td><img src="alignments/413-385.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR7|445|386<br/>A. baumannii A92</td><td>42</td><td>42</td><td><img src="alignments/413-386.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>37</td><td>37</td><td><img src="alignments/413-396.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>37</td><td>37</td><td><img src="alignments/413-399.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbaR22|447|388<br/>Acinetobacter baumannii MDR-ZJ06</td><td>54</td><td>54</td><td><img src="alignments/413-388.xfma.png" /></td></tr>
<tr><td>RI-1|472|413<br/>A. baumannii AB5075-UW</td><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>39</td><td>39</td><td><img src="alignments/413-405.xfma.png" /></td></tr>
<tr><td>SPI-1 (cGI1)|125|118<br/>Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome</td><td>SPI-1 (cGI3)|338|294<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. LT2</td><td>100</td><td>100</td><td><img src="alignments/118-294.xfma.png" /></td></tr>
<tr><td>SPI-1 (cGI1)|125|118<br/>Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome</td><td>SPI-1 (cGI2)|328|284<br/>Salmonella enterica subsp. enterica serovar Typhi str. CT18</td><td>100</td><td>100</td><td><img src="alignments/118-284.xfma.png" /></td></tr>
<tr><td>SPI-2 (cGI1)|126|119<br/>Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome</td><td>SPI-2 (cGI3)|339|295<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. LT2</td><td>94</td><td>94</td><td><img src="alignments/119-295.xfma.png" /></td></tr>
<tr><td>SPI-2 (cGI1)|126|119<br/>Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome</td><td>SPI-2 (cGI2)|329|285<br/>Salmonella enterica subsp. enterica serovar Typhi str. CT18</td><td>94</td><td>94</td><td><img src="alignments/119-285.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>100</td><td>100</td><td><img src="alignments/398-393.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/398-400.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>83</td><td>81</td><td><img src="alignments/398-395.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>80</td><td>78</td><td><img src="alignments/398-394.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>78</td><td>76</td><td><img src="alignments/398-397.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>84</td><td>84</td><td><img src="alignments/398-392.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>62</td><td>61</td><td><img src="alignments/398-387.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>84</td><td>84</td><td><img src="alignments/398-389.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>33</td><td>31</td><td><img src="alignments/398-385.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>33</td><td>33</td><td><img src="alignments/398-407.xfma.png" /></td></tr>
<tr><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>35</td><td>33</td><td><img src="alignments/398-128.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>89</td><td>84</td><td><img src="alignments/399-394.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>96</td><td>96</td><td><img src="alignments/399-387.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR7|445|386<br/>A. baumannii A92</td><td>97</td><td>97</td><td><img src="alignments/399-386.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>97</td><td>97</td><td><img src="alignments/399-396.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>96</td><td>96</td><td><img src="alignments/399-390.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>83</td><td>78</td><td><img src="alignments/399-397.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>97</td><td>97</td><td><img src="alignments/399-400.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>97</td><td>97</td><td><img src="alignments/399-385.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>97</td><td>97</td><td><img src="alignments/399-392.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>90</td><td>85</td><td><img src="alignments/399-395.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>84</td><td>84</td><td><img src="alignments/399-393.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>85</td><td>85</td><td><img src="alignments/399-389.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>46</td><td>46</td><td><img src="alignments/399-407.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>36</td><td>35</td><td><img src="alignments/399-398.xfma.png" /></td></tr>
<tr><td>AbaR30b|458|399<br/>A. baumannii A388</td><td>AbGRI3|461|402<br/>A. baumannii SGH0701</td><td>35</td><td>34</td><td><img src="alignments/399-402.xfma.png" /></td></tr>
<tr><td>VPI-1|359|314<br/>Vibrio cholerae N16961, chr1</td><td>VPI|348|304<br/>Vibrio cholerae O1 biovar El Tor str. N16961</td><td>100</td><td>100</td><td><img src="alignments/314-304.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI2)|488|429<br/>Campylobacter concisus H16O-S1</td><td>CON_PiiC (cGI1)|487|428<br/>Campylobacter concisus P1CDO2</td><td>97</td><td>97</td><td><img src="alignments/429-428.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI2)|488|429<br/>Campylobacter concisus H16O-S1</td><td>cGI4|476|417<br/>Campylobacter fetus fetus strain IMD523-06</td><td>45</td><td>45</td><td><img src="alignments/429-417.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI2)|488|429<br/>Campylobacter concisus H16O-S1</td><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>40</td><td>40</td><td><img src="alignments/429-418.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI2)|488|429<br/>Campylobacter concisus H16O-S1</td><td>C. featus subsp. venerealis-specific genomic island|473|414<br/>Campylobacter fetus venerealis strain ATCC 19438</td><td>38</td><td>38</td><td><img src="alignments/429-414.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI1)|487|428<br/>Campylobacter concisus P1CDO2</td><td>cGI4|476|417<br/>Campylobacter fetus fetus strain IMD523-06</td><td>46</td><td>46</td><td><img src="alignments/428-417.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI1)|487|428<br/>Campylobacter concisus P1CDO2</td><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>41</td><td>41</td><td><img src="alignments/428-418.xfma.png" /></td></tr>
<tr><td>CON_PiiC (cGI1)|487|428<br/>Campylobacter concisus P1CDO2</td><td>C. featus subsp. venerealis-specific genomic island|473|414<br/>Campylobacter fetus venerealis strain ATCC 19438</td><td>39</td><td>39</td><td><img src="alignments/428-414.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>66</td><td>59</td><td><img src="alignments/389-392.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>72</td><td>65</td><td><img src="alignments/389-400.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>68</td><td>62</td><td><img src="alignments/389-393.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>63</td><td>54</td><td><img src="alignments/389-395.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>54</td><td>45</td><td><img src="alignments/389-387.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>56</td><td>49</td><td><img src="alignments/389-397.xfma.png" /></td></tr>
<tr><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>62</td><td>52</td><td><img src="alignments/389-394.xfma.png" /></td></tr>
<tr><td>fs1|364|319<br/>Vibrio cholerae AL-4450</td><td>VEJphi_phage|357|312<br/>Vibrio cholerae MO45</td><td>99</td><td>99</td><td><img src="alignments/319-312.xfma.png" /></td></tr>
<tr><td>fs1|364|319<br/>Vibrio cholerae AL-4450</td><td>KSF-1_phage|362|317<br/>Vibrio cholerae 55V71</td><td>32</td><td>32</td><td><img src="alignments/319-317.xfma.png" /></td></tr>
<tr><td>A500|93|86<br/>Listeria monocytogenes WSLC1042</td><td>A118 (cGI1)|94|87<br/>Listeria monocytogenes EGD-e</td><td>56</td><td>56</td><td><img src="alignments/86-87.xfma.png" /></td></tr>
<tr><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>PAGI-5|2|2<br/>Pseudomonas aeruginosa PSE9</td><td>44</td><td>43</td><td><img src="alignments/14-2.xfma.png" /></td></tr>
<tr><td>ExoU-C|16|16<br/>Pseudomonas aeruginosa X13273</td><td>ExoU-A|14|14<br/>Pseudomonas aeruginosa 6077</td><td>99</td><td>99</td><td><img src="alignments/16-14.xfma.png" /></td></tr>
<tr><td>ExoU-C|16|16<br/>Pseudomonas aeruginosa X13273</td><td>ExoU-B|15|15<br/>Pseudomonas aeruginosa 19660</td><td>99</td><td>99</td><td><img src="alignments/16-15.xfma.png" /></td></tr>
<tr><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>SaPIn1 (cGI2)|308|264<br/>Staphylococcus aureus subsp. aureus N315</td><td>74</td><td>74</td><td><img src="alignments/178-264.xfma.png" /></td></tr>
<tr><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>SaPI1 (cGI1)|210|175<br/>Staphylococcus aureus subspecies aureus</td><td>42</td><td>42</td><td><img src="alignments/178-175.xfma.png" /></td></tr>
<tr><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>SaPIn1 (cGI1)|301|257<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>74</td><td>74</td><td><img src="alignments/178-257.xfma.png" /></td></tr>
<tr><td>SaPI2|213|178<br/>Staphylococcus aureus subspecies aureus</td><td>SaGIm|302|258<br/>Staphylococcus aureus subsp. aureus Mu50</td><td>30</td><td>30</td><td><img src="alignments/178-258.xfma.png" /></td></tr>
<tr><td>C. featus subsp. venerealis-specific genomic island|473|414<br/>Campylobacter fetus venerealis strain ATCC 19438</td><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>72</td><td>72</td><td><img src="alignments/414-418.xfma.png" /></td></tr>
<tr><td>C. featus subsp. venerealis-specific genomic island|473|414<br/>Campylobacter fetus venerealis strain ATCC 19438</td><td>cGI4|476|417<br/>Campylobacter fetus fetus strain IMD523-06</td><td>78</td><td>78</td><td><img src="alignments/414-417.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>95</td><td>95</td><td><img src="alignments/392-393.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>99</td><td><img src="alignments/392-400.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>91</td><td>88</td><td><img src="alignments/392-395.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>88</td><td>84</td><td><img src="alignments/392-397.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>91</td><td>87</td><td><img src="alignments/392-394.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>83</td><td>80</td><td><img src="alignments/392-387.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>59</td><td>49</td><td><img src="alignments/392-385.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR7|445|386<br/>A. baumannii A92</td><td>46</td><td>35</td><td><img src="alignments/392-386.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>44</td><td>33</td><td><img src="alignments/392-396.xfma.png" /></td></tr>
<tr><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>33</td><td>30</td><td><img src="alignments/392-407.xfma.png" /></td></tr>
<tr><td>LES prophage 3|22|22<br/>Pseudomonas aeruginosa LESB58</td><td>LES prophage 2|21|21<br/>Pseudomonas aeruginosa LESB58</td><td>38</td><td>38</td><td><img src="alignments/22-21.xfma.png" /></td></tr>
<tr><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>63</td><td>63</td><td><img src="alignments/28-1.xfma.png" /></td></tr>
<tr><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>44</td><td>44</td><td><img src="alignments/28-31.xfma.png" /></td></tr>
<tr><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>40</td><td>40</td><td><img src="alignments/28-34.xfma.png" /></td></tr>
<tr><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>40</td><td>40</td><td><img src="alignments/28-33.xfma.png" /></td></tr>
<tr><td>LESGI-3|28|28<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>40</td><td>40</td><td><img src="alignments/28-35.xfma.png" /></td></tr>
<tr><td>LES prophage 6|25|25<br/>Pseudomonas aeruginosa LESB58</td><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>42</td><td>42</td><td><img src="alignments/25-33.xfma.png" /></td></tr>
<tr><td>cGI4|476|417<br/>Campylobacter fetus fetus strain IMD523-06</td><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>69</td><td>69</td><td><img src="alignments/417-418.xfma.png" /></td></tr>
<tr><td>SPI-5 (cGI1)|129|122<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344</td><td>SPI-5 (cGI3)|342|298<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. LT2</td><td>99</td><td>99</td><td><img src="alignments/122-298.xfma.png" /></td></tr>
<tr><td>SPI-5 (cGI1)|129|122<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344</td><td>SPI-5 (cGI2)|332|288<br/>Salmonella enterica subsp. enterica serovar Typhi str. CT18</td><td>73</td><td>73</td><td><img src="alignments/122-288.xfma.png" /></td></tr>
<tr><td>SPI-6 (cGI1)|130|123<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344</td><td>SPI-6 (cGI3)|343|299<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. LT2</td><td>99</td><td>99</td><td><img src="alignments/123-299.xfma.png" /></td></tr>
<tr><td>SPI-6 (cGI1)|130|123<br/>Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344</td><td>SPI-6 (cGI2)|333|289<br/>Salmonella enterica subsp. enterica serovar Typhi str. CT18</td><td>86</td><td>83</td><td><img src="alignments/123-289.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/385-400.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>89</td><td>89</td><td><img src="alignments/385-389.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>95</td><td>92</td><td><img src="alignments/385-395.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>95</td><td>89</td><td><img src="alignments/385-394.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>99</td><td>98</td><td><img src="alignments/385-387.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR7|445|386<br/>A. baumannii A92</td><td>74</td><td>72</td><td><img src="alignments/385-386.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>70</td><td>68</td><td><img src="alignments/385-396.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>89</td><td>83</td><td><img src="alignments/385-397.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>89</td><td>89</td><td><img src="alignments/385-393.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>36</td><td>36</td><td><img src="alignments/385-407.xfma.png" /></td></tr>
<tr><td>AbaR6|444|385<br/>A. baumannii D2</td><td>AbaR22|447|388<br/>Acinetobacter baumannii MDR-ZJ06</td><td>38</td><td>38</td><td><img src="alignments/385-388.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>95</td><td>95</td><td><img src="alignments/386-396.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>93</td><td>88</td><td><img src="alignments/386-394.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>99</td><td>99</td><td><img src="alignments/386-387.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>84</td><td>79</td><td><img src="alignments/386-397.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/386-400.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>94</td><td>89</td><td><img src="alignments/386-395.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>88</td><td>88</td><td><img src="alignments/386-393.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>84</td><td>84</td><td><img src="alignments/386-389.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>47</td><td>47</td><td><img src="alignments/386-407.xfma.png" /></td></tr>
<tr><td>AbaR7|445|386<br/>A. baumannii A92</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>40</td><td>35</td><td><img src="alignments/386-398.xfma.png" /></td></tr>
<tr><td>VGI I|477|418<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>VGI IV|482|423<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>42</td><td>42</td><td><img src="alignments/418-423.xfma.png" /></td></tr>
<tr><td>VGI IIIA-2|481|422<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>FGI I|484|425<br/>Campylobacter fetus subsp. fetus 82-40</td><td>97</td><td>97</td><td><img src="alignments/422-425.xfma.png" /></td></tr>
<tr><td>VGI IIIA-2|481|422<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>VGI IIIA-1|479|420<br/>Campylobacter fetus subsp. venerealis str. 84-112</td><td>43</td><td>37</td><td><img src="alignments/422-420.xfma.png" /></td></tr>
<tr><td>LIPI-1 (cGI1)|82|78<br/>Listeria monocytogenes EGD</td><td>LIPI-1 (cGI2)|292|248<br/>Listeria monocytogenes EGD-e</td><td>100</td><td>100</td><td><img src="alignments/78-248.xfma.png" /></td></tr>
<tr><td>TLC phage|358|313<br/>Vibrio cholerae AL 33457</td><td>RTX|349|305<br/>Vibrio cholerae O1 biovar El Tor str. N16961</td><td>71</td><td>71</td><td><img src="alignments/313-305.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>68</td><td>68</td><td><img src="alignments/372-395.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>61</td><td>61</td><td><img src="alignments/372-387.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>80</td><td>80</td><td><img src="alignments/372-393.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>80</td><td>80</td><td><img src="alignments/372-400.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>61</td><td>61</td><td><img src="alignments/372-392.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>80</td><td>80</td><td><img src="alignments/372-398.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>61</td><td>61</td><td><img src="alignments/372-394.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>80</td><td>80</td><td><img src="alignments/372-390.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>61</td><td>61</td><td><img src="alignments/372-397.xfma.png" /></td></tr>
<tr><td>HK302|427|372<br/>A. baumannii HK302</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>40</td><td>40</td><td><img src="alignments/372-389.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>97</td><td>95</td><td><img src="alignments/387-395.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>95</td><td>95</td><td><img src="alignments/387-393.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/387-400.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>93</td><td>91</td><td><img src="alignments/387-397.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>97</td><td>95</td><td><img src="alignments/387-394.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>52</td><td>41</td><td><img src="alignments/387-396.xfma.png" /></td></tr>
<tr><td>AbaR8|446|387<br/>A. baumannii D13</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>34</td><td>31</td><td><img src="alignments/387-407.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>55</td><td>44</td><td><img src="alignments/405-393.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>55</td><td>44</td><td><img src="alignments/405-400.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>55</td><td>44</td><td><img src="alignments/405-395.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>55</td><td>44</td><td><img src="alignments/405-397.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>55</td><td>44</td><td><img src="alignments/405-394.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR8|446|387<br/>A. baumannii D13</td><td>55</td><td>44</td><td><img src="alignments/405-387.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>55</td><td>44</td><td><img src="alignments/405-392.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR6|444|385<br/>A. baumannii D2</td><td>53</td><td>42</td><td><img src="alignments/405-385.xfma.png" /></td></tr>
<tr><td>AbGRI1-1|464|405<br/>A. baumannii RUH134</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>55</td><td>44</td><td><img src="alignments/405-390.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>100</td><td>100</td><td><img src="alignments/406-393.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>100</td><td>100</td><td><img src="alignments/406-390.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/406-400.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>100</td><td>90</td><td><img src="alignments/406-398.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR5|451|392<br/>A. baumannii 3208</td><td>77</td><td>77</td><td><img src="alignments/406-392.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>77</td><td>77</td><td><img src="alignments/406-389.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>63</td><td>42</td><td><img src="alignments/406-128.xfma.png" /></td></tr>
<tr><td>AbGRI2-0a|465|406<br/>A. baumannii RUH134</td><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>31</td><td>31</td><td><img src="alignments/406-407.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>93</td><td>88</td><td><img src="alignments/407-400.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>78</td><td>67</td><td><img src="alignments/407-395.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>92</td><td>87</td><td><img src="alignments/407-389.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>81</td><td>77</td><td><img src="alignments/407-393.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>SRL|209|174<br/>Shigella flexneri 2a strain YSH6000</td><td>34</td><td>33</td><td><img src="alignments/407-174.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>63</td><td>49</td><td><img src="alignments/407-397.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR23|453|394<br/>A. baumannii D81</td><td>73</td><td>59</td><td><img src="alignments/407-394.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AGI1|460|401<br/>A. baumannii</td><td>38</td><td>36</td><td><img src="alignments/407-401.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>45</td><td>36</td><td><img src="alignments/407-396.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>49</td><td>46</td><td><img src="alignments/407-34.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>49</td><td>46</td><td><img src="alignments/407-35.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>SGI1-K|146|128<br/>Salmonella enterica subsp. enterica serovar Kentucky strain SRC73</td><td>54</td><td>41</td><td><img src="alignments/407-128.xfma.png" /></td></tr>
<tr><td>AbGRI2-0b|466|407<br/>A. baumannii RUH134</td><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>46</td><td>43</td><td><img src="alignments/407-33.xfma.png" /></td></tr>
<tr><td>AbaR23|453|394<br/>A. baumannii D81</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>100</td><td>100</td><td><img src="alignments/394-395.xfma.png" /></td></tr>
<tr><td>AbaR23|453|394<br/>A. baumannii D81</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>95</td><td>95</td><td><img src="alignments/394-393.xfma.png" /></td></tr>
<tr><td>AbaR23|453|394<br/>A. baumannii D81</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/394-400.xfma.png" /></td></tr>
<tr><td>AbaR23|453|394<br/>A. baumannii D81</td><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>95</td><td>95</td><td><img src="alignments/394-397.xfma.png" /></td></tr>
<tr><td>AbaR23|453|394<br/>A. baumannii D81</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>42</td><td>32</td><td><img src="alignments/394-396.xfma.png" /></td></tr>
<tr><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>AbaR24|454|395<br/>A. baumannii A1</td><td>100</td><td>100</td><td><img src="alignments/397-395.xfma.png" /></td></tr>
<tr><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>95</td><td>95</td><td><img src="alignments/397-393.xfma.png" /></td></tr>
<tr><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/397-400.xfma.png" /></td></tr>
<tr><td>AbaR27|456|397<br/>Acinetobacter baumannii A424</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>40</td><td>30</td><td><img src="alignments/397-396.xfma.png" /></td></tr>
<tr><td>AbaR24|454|395<br/>A. baumannii A1</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>94</td><td>94</td><td><img src="alignments/395-393.xfma.png" /></td></tr>
<tr><td>AbaR24|454|395<br/>A. baumannii A1</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/395-400.xfma.png" /></td></tr>
<tr><td>AbaR24|454|395<br/>A. baumannii A1</td><td>AbaR26|455|396<br/>A. baumannii D30</td><td>42</td><td>31</td><td><img src="alignments/395-396.xfma.png" /></td></tr>
<tr><td>AbaR26|455|396<br/>A. baumannii D30</td><td>AbaR3|449|390<br/>Acinetobacter baumannii AB0057</td><td>99</td><td>99</td><td><img src="alignments/396-390.xfma.png" /></td></tr>
<tr><td>AbaR26|455|396<br/>A. baumannii D30</td><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>100</td><td>100</td><td><img src="alignments/396-400.xfma.png" /></td></tr>
<tr><td>AbaR26|455|396<br/>A. baumannii D30</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>87</td><td>87</td><td><img src="alignments/396-393.xfma.png" /></td></tr>
<tr><td>AbaR26|455|396<br/>A. baumannii D30</td><td>AbaR1|448|389<br/>A. baumannii AYE</td><td>88</td><td>88</td><td><img src="alignments/396-389.xfma.png" /></td></tr>
<tr><td>AbaR26|455|396<br/>A. baumannii D30</td><td>AbaR30a|457|398<br/>A. baumannii A388</td><td>36</td><td>31</td><td><img src="alignments/396-398.xfma.png" /></td></tr>
<tr><td>AbaR0|459|400<br/>A. baumannii WM98</td><td>AbaR21|452|393<br/>A. baumannii A297</td><td>95</td><td>95</td><td><img src="alignments/400-393.xfma.png" /></td></tr>
<tr><td>MDRGI|475|416<br/>Campylobacter coli ZTA09/02204</td><td>GI2|389|334<br/>Streptococcus suis SC070731</td><td>39</td><td>30</td><td><img src="alignments/416-334.xfma.png" /></td></tr>
<tr><td>MDRGI|475|416<br/>Campylobacter coli ZTA09/02204</td><td>aminoglycoside_resistance_island|474|415<br/>C. coli SX81</td><td>35</td><td>30</td><td><img src="alignments/416-415.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>100</td><td>100</td><td><img src="alignments/35-34.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>96</td><td>95</td><td><img src="alignments/35-33.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>52</td><td>51</td><td><img src="alignments/35-31.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>47</td><td>47</td><td><img src="alignments/35-1.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI2)|35|35<br/>Pseudomonas aeruginosa ST235, isolate KMU11</td><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>47</td><td>47</td><td><img src="alignments/35-11.xfma.png" /></td></tr>
<tr><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>78</td><td>76</td><td><img src="alignments/33-34.xfma.png" /></td></tr>
<tr><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>45</td><td>44</td><td><img src="alignments/33-31.xfma.png" /></td></tr>
<tr><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>38</td><td>38</td><td><img src="alignments/33-1.xfma.png" /></td></tr>
<tr><td>PAGI-15|33|33<br/>Pseudomonas aeruginosa RI_IH-2</td><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>38</td><td>38</td><td><img src="alignments/33-11.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>PAGI-13|31|31<br/>Pseudomonas aeruginosa strain CCBH4851</td><td>52</td><td>51</td><td><img src="alignments/34-31.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>PAGI-17|1|1<br/>Pseudomonas aeruginosa 24Pae112</td><td>47</td><td>47</td><td><img src="alignments/34-1.xfma.png" /></td></tr>
<tr><td>PAGI-16 (cGI1)|34|34<br/>Pseudomonas aeruginosa ST235, isolate BP14</td><td>PAGI-2|11|11<br/>Pseudomonas aeruginosa Strain C</td><td>47</td><td>47</td><td><img src="alignments/34-11.xfma.png" /></td></tr>
<tr><td>CTX phage|79|75<br/>Vibrio cholerae C1, chr1</td><td>RTX|349|305<br/>Vibrio cholerae O1 biovar El Tor str. N16961</td><td>100</td><td>100</td><td><img src="alignments/75-305.xfma.png" /></td></tr>
<tr><td>pVAI2|365|320<br/>V. anguillarum</td><td>pVAI1|366|321<br/>V. anguillarum</td><td>100</td><td>100</td><td><img src="alignments/320-321.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>SHI-1|206|171<br/>Shigella flexneri 2a str. 301</td><td>67</td><td>67</td><td><img src="alignments/206-171.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>PAI-CFT073-serX|198|164<br/>Escherichia coli CFT073</td><td>56</td><td>56</td><td><img src="alignments/206-164.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>PAI-CFT073-pheV|197|163<br/>Escherichia coli CFT073</td><td>69</td><td>69</td><td><img src="alignments/206-163.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>SpLE2|266|222<br/>Escherichia coli O157:H7 str. Sakai</td><td>35</td><td>35</td><td><img src="alignments/206-222.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>SpLE1|265|221<br/>Escherichia coli O157:H7 str. Sakai</td><td>37</td><td>37</td><td><img src="alignments/206-221.xfma.png" /></td></tr>
<tr><td>CP4-44|250|206<br/>Escherichia coli K-12</td><td>SRL|209|174<br/>Shigella flexneri 2a strain YSH6000</td><td>38</td><td>38</td><td><img src="alignments/206-174.xfma.png" /></td></tr>
<tr><td>CAG (cGI1)|289|245<br/>Helicobacter pylori 26695</td><td>CAG (cGI2)|290|246<br/>Helicobacter pylori J99</td><td>99</td><td>98</td><td><img src="alignments/245-246.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>64</td><td>63</td><td><img src="alignments/211-230.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>69</td><td>68</td><td><img src="alignments/211-238.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>77</td><td>76</td><td><img src="alignments/211-219.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>62</td><td>62</td><td><img src="alignments/211-236.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>65</td><td>65</td><td><img src="alignments/211-235.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>50</td><td>50</td><td><img src="alignments/211-210.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>51</td><td>51</td><td><img src="alignments/211-232.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>48</td><td>48</td><td><img src="alignments/211-209.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>45</td><td>45</td><td><img src="alignments/211-212.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>44</td><td>44</td><td><img src="alignments/211-240.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>40</td><td>40</td><td><img src="alignments/211-237.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/211-217.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/211-160.xfma.png" /></td></tr>
<tr><td>CP-933M|255|211<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>33</td><td>33</td><td><img src="alignments/211-218.xfma.png" /></td></tr>
<tr><td>BP-933W|257|213<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp5|275|231<br/>Escherichia coli O157:H7 str. Sakai</td><td>88</td><td>88</td><td><img src="alignments/213-231.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>87</td><td>87</td><td><img src="alignments/209-232.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>52</td><td>52</td><td><img src="alignments/209-219.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>51</td><td>51</td><td><img src="alignments/209-238.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>50</td><td>50</td><td><img src="alignments/209-235.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>45</td><td>45</td><td><img src="alignments/209-236.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>38</td><td>38</td><td><img src="alignments/209-210.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>31</td><td>31</td><td><img src="alignments/209-217.xfma.png" /></td></tr>
<tr><td>CP-933N|253|209<br/>Escherichia coli O157:H7 str. EDL933</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>31</td><td>31</td><td><img src="alignments/209-160.xfma.png" /></td></tr>
<tr><td>CP-933C|258|214<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp7|277|233<br/>Escherichia coli O157:H7 str. Sakai</td><td>100</td><td>100</td><td><img src="alignments/214-233.xfma.png" /></td></tr>
<tr><td>CP-933X|259|215<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>76</td><td>76</td><td><img src="alignments/215-234.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>55</td><td>40</td><td><img src="alignments/217-235.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>60</td><td>46</td><td><img src="alignments/217-230.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>51</td><td>40</td><td><img src="alignments/217-237.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>55</td><td>44</td><td><img src="alignments/217-240.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>45</td><td>38</td><td><img src="alignments/217-218.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>50</td><td>40</td><td><img src="alignments/217-212.xfma.png" /></td></tr>
<tr><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>45</td><td>31</td><td><img src="alignments/217-238.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>71</td><td>70</td><td><img src="alignments/218-236.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>56</td><td>56</td><td><img src="alignments/218-240.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>58</td><td>58</td><td><img src="alignments/218-230.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>36</td><td>36</td><td><img src="alignments/218-212.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>43</td><td>43</td><td><img src="alignments/218-237.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>35</td><td>35</td><td><img src="alignments/218-238.xfma.png" /></td></tr>
<tr><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>33</td><td>33</td><td><img src="alignments/218-219.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>83</td><td>83</td><td><img src="alignments/219-238.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>77</td><td>77</td><td><img src="alignments/219-235.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>65</td><td>65</td><td><img src="alignments/219-236.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>52</td><td>52</td><td><img src="alignments/219-232.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>52</td><td>52</td><td><img src="alignments/219-210.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>43</td><td>43</td><td><img src="alignments/219-240.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/219-212.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>38</td><td>38</td><td><img src="alignments/219-237.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>45</td><td>45</td><td><img src="alignments/219-217.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>45</td><td>45</td><td><img src="alignments/219-160.xfma.png" /></td></tr>
<tr><td>CP-933P|263|219<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>42</td><td>42</td><td><img src="alignments/219-230.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp15|285|241<br/>Escherichia coli O157:H7 str. Sakai</td><td>54</td><td>54</td><td><img src="alignments/212-241.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>75</td><td>75</td><td><img src="alignments/212-240.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>54</td><td>54</td><td><img src="alignments/212-237.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>42</td><td>42</td><td><img src="alignments/212-238.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>32</td><td>32</td><td><img src="alignments/212-236.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>39</td><td>39</td><td><img src="alignments/212-235.xfma.png" /></td></tr>
<tr><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>48</td><td>48</td><td><img src="alignments/212-230.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp15|285|241<br/>Escherichia coli O157:H7 str. Sakai</td><td>68</td><td>68</td><td><img src="alignments/210-241.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>53</td><td>53</td><td><img src="alignments/210-236.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>47</td><td>47</td><td><img src="alignments/210-235.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>50</td><td>50</td><td><img src="alignments/210-238.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>41</td><td>41</td><td><img src="alignments/210-232.xfma.png" /></td></tr>
<tr><td>CP-933V|254|210<br/>Escherichia coli O157:H7 str. EDL933</td><td>BP-933W|257|213<br/>Escherichia coli O157:H7 str. EDL933</td><td>32</td><td>32</td><td><img src="alignments/210-213.xfma.png" /></td></tr>
<tr><td>CP-933H&I|260|216<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp2|272|228<br/>Escherichia coli O157:H7 str. Sakai</td><td>54</td><td>54</td><td><img src="alignments/216-228.xfma.png" /></td></tr>
<tr><td>CP-933H&I|260|216<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp1|271|227<br/>Escherichia coli O157:H7 str. Sakai</td><td>46</td><td>46</td><td><img src="alignments/216-227.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp17|287|243<br/>Escherichia coli O157:H7 str. Sakai</td><td>99</td><td>99</td><td><img src="alignments/220-243.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933R|262|218<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/220-218.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>41</td><td>41</td><td><img src="alignments/220-240.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/220-217.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>44</td><td>44</td><td><img src="alignments/220-160.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>41</td><td>41</td><td><img src="alignments/220-238.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>39</td><td>39</td><td><img src="alignments/220-230.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>CP-933U|256|212<br/>Escherichia coli O157:H7 str. EDL933</td><td>41</td><td>41</td><td><img src="alignments/220-212.xfma.png" /></td></tr>
<tr><td>CP-933Y|264|220<br/>Escherichia coli O157:H7 str. EDL933</td><td>Sp3|273|229<br/>Escherichia coli O157:H7 str. Sakai</td><td>30</td><td>30</td><td><img src="alignments/220-229.xfma.png" /></td></tr>
<tr><td>LEE (cGI2)|252|208<br/>Escherichia coli O157:H7 str. EDL933</td><td>SpLE4|268|224<br/>Escherichia coli O157:H7 str. Sakai</td><td>94</td><td>94</td><td><img src="alignments/208-224.xfma.png" /></td></tr>
<tr><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp14|284|240<br/>Escherichia coli O157:H7 str. Sakai</td><td>63</td><td>63</td><td><img src="alignments/230-240.xfma.png" /></td></tr>
<tr><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>40</td><td>40</td><td><img src="alignments/230-238.xfma.png" /></td></tr>
<tr><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>42</td><td>42</td><td><img src="alignments/230-237.xfma.png" /></td></tr>
<tr><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>37</td><td>37</td><td><img src="alignments/230-235.xfma.png" /></td></tr>
<tr><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>50</td><td>50</td><td><img src="alignments/232-238.xfma.png" /></td></tr>
<tr><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>47</td><td>47</td><td><img src="alignments/232-235.xfma.png" /></td></tr>
<tr><td>Sp6|276|232<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>43</td><td>43</td><td><img src="alignments/232-236.xfma.png" /></td></tr>
<tr><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp11|281|237<br/>Escherichia coli O157:H7 str. Sakai</td><td>37</td><td>37</td><td><img src="alignments/234-237.xfma.png" /></td></tr>
<tr><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp4|274|230<br/>Escherichia coli O157:H7 str. Sakai</td><td>30</td><td>30</td><td><img src="alignments/234-230.xfma.png" /></td></tr>
<tr><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>31</td><td>31</td><td><img src="alignments/234-217.xfma.png" /></td></tr>
<tr><td>Sp8|278|234<br/>Escherichia coli O157:H7 str. Sakai</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>31</td><td>31</td><td><img src="alignments/234-160.xfma.png" /></td></tr>
<tr><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>48</td><td>48</td><td><img src="alignments/235-236.xfma.png" /></td></tr>
<tr><td>Sp9|279|235<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>56</td><td>55</td><td><img src="alignments/235-238.xfma.png" /></td></tr>
<tr><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>Sp12|282|238<br/>Escherichia coli O157:H7 str. Sakai</td><td>59</td><td>59</td><td><img src="alignments/236-238.xfma.png" /></td></tr>
<tr><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>OI-57|194|160<br/>Escherichia coli O157:H7 str. EDL933</td><td>33</td><td>33</td><td><img src="alignments/236-160.xfma.png" /></td></tr>
<tr><td>Sp10|280|236<br/>Escherichia coli O157:H7 str. Sakai</td><td>CP-933O|261|217<br/>Escherichia coli O157:H7 str. EDL933</td><td>32</td><td>32</td><td><img src="alignments/236-217.xfma.png" /></td></tr>