ClusteringGenomicHMMSegmenter can fail if random memory length exceeds maximum allowed.

[droazen]

@samuelklee commented on Tue Aug 09 2016

This combined with an unset random seed was causing AlleleFractionSegmenter.testChromosomesOnDifferentSegments to fail intermittently in #633. @davidbenjamin could you take a look when you get back? This could be fixed easily by a Math.min in the right place, but I don't know if the fact that the memory length seems to blow up is something generic that happens when we collapse to a single state that needs to be addressed more carefully.

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@samuelklee commented on Wed Aug 17 2016

@davidbenjamin can you take a quick look? I think it's probably a quick fix.

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@davidbenjamin commented on Wed Aug 17 2016

Sure.

[samuelklee]

Obviated by #2858.