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Tool to parse CPX variants into basic types #4323

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SHuang-Broad opened this issue Jan 31, 2018 · 0 comments · Fixed by #4602
Closed

Tool to parse CPX variants into basic types #4323

SHuang-Broad opened this issue Jan 31, 2018 · 0 comments · Fixed by #4602
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@SHuang-Broad
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Currently we emit cpx.vcf for complex SV's, and one record for each variant.
But this may hurt us in terms of performance evaluation when smaller, simple variants are incorporated into a complex one.
We should have a tool to extract these smaller variants and link them with EVENTID.
This shouldn't be difficult.
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(SV) re-interpreting CPX records by experimental interpretation tool broadinstitute/gatk
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