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Create a WDL workflow for ncbi.py prep_genbank_files (and the various prerequisite steps leading up to that) that can prepare an assembly for submission to Genbank. Pull assembly stats from WDL outputs (e.g. the outputs of the plot_coverage WDL task) instead of Snakemake outputs (e.g. pipes/rules/reports_only) for the submission metadata.
Workflow should be a single-sample workflow that takes an assembly (fasta), assembly metrics (see above), a reference genome (fasta), reference annotation (gb), and outputs an NCBI tbl file. Possibly an asn file too if the user provides an authors.sbt and other such prerequisites.
The text was updated successfully, but these errors were encountered:
Create a WDL workflow for
ncbi.py prep_genbank_files
(and the various prerequisite steps leading up to that) that can prepare an assembly for submission to Genbank. Pull assembly stats from WDL outputs (e.g. the outputs of theplot_coverage
WDL task) instead of Snakemake outputs (e.g.pipes/rules/reports_only
) for the submission metadata.Workflow should be a single-sample workflow that takes an assembly (fasta), assembly metrics (see above), a reference genome (fasta), reference annotation (gb), and outputs an NCBI
tbl
file. Possibly anasn
file too if the user provides anauthors.sbt
and other such prerequisites.The text was updated successfully, but these errors were encountered: