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RNAWithUMIs pipeline fails if there are very few reads #913

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kachulis opened this issue Feb 7, 2023 · 1 comment · Fixed by #917

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kachulis commented Feb 7, 2023 •

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with 0 reads, FastqToSam fails. with small numbers of reads, checkfingerprint fails because all lods are 0.

We'd like the pipeline to succeed in these cases

kachulis assigned kachulis and mmorgantaylor

kachulis mentioned this issue

Handle situation with few or zero reads in TCap #917

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kevinpalis commented Apr 6, 2023

This looks like it's fixed by PR #917
Closing when the PR gets merged.

kachulis closed this as completed in #917

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