Update Sample Case Jupyter Notebook #62
Annotations
5 errors and 1 warning
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/man/examples.md:21-27
```@example
using DataFrames
DataFrame(
output.data,
output.colnames
)
```
exception =
UndefVarError: `output` not defined
Stacktrace:
[1] top-level scope
@ examples.md:23
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/man/examples.md:29-36
```@example
using KEGGAPI
output = KEGGAPI.conv("ncbi-geneid", "eco");
DataFrame(
output.data,
output.colnames
)
```
exception =
UndefVarError: `DataFrame` not defined
Stacktrace:
[1] top-level scope
@ examples.md:32
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/man/examples.md:38-45
```@example
using KEGGAPI
output = KEGGAPI.conv("ncbi-proteinid", "hsa:10458+ece:Z5100");
DataFrame(
output.data,
output.colnames
)
```
exception =
UndefVarError: `DataFrame` not defined
Stacktrace:
[1] top-level scope
@ examples.md:41
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/man/examples.md:47-54
```@example
using KEGGAPI
output = KEGGAPI.conv("genes", "ncbi-geneid:948364");
DataFrame(
output.data,
output.colnames
)
```
exception =
UndefVarError: `DataFrame` not defined
Stacktrace:
[1] top-level scope
@ examples.md:50
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1
Process completed with exit code 1.
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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