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The problem:
Samples that are {profiled, not mutated} on gene EGFR-mutations are classified as {not profiled} in legacy backend.
To replicate:
Open study "brca_tcga_pan_can_atlas_2018"
In "Charts->Gene Specific", add "Mutations: Mutated vs Not Mutated" and "Putative copy-number alterations from GISTIC" for gene EGFR.
Select type {NA, HOMDEL} in "EGFR:Putative copy-number alterations from GISTIC"
Check the samples in "EGFR:Mutations: Mutated vs Not Mutated"
Additional information:
It was found during the verification testing of ClickHouse implementation against legacy endpoint, samples are checked and they are indeed profiled based on my understanding.
The issue should be inside endpoint "mutation-data-count" when it's classifying samples.
The text was updated successfully, but these errors were encountered:
The problem:
Samples that are {profiled, not mutated} on gene EGFR-mutations are classified as {not profiled} in legacy backend.
To replicate:
Additional information:
The text was updated successfully, but these errors were encountered: