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Arbitrary 2-Dimensional Charts in Study View #223
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A couple of product considerations @cBioPortal/product:
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Hi @adamabeshouse |
@Sjoerd-van-Hagen we decided with the FGA vs mutation count plot to use a density plot aka 2d histogram because the smallness of the chart means the full size points become impossible to read and interact with for large studies. So that's my question - how do we handle a box plot given the smallness of the chart? |
@adamabeshouse would a smaller box plot not work? We do not have to draw the individual points if it is too small. When the user scales it up to a certain point we can start showing them. Does that make sense? |
@Sjoerd-van-Hagen this is exactly my question - how do we not draw the individual points in a box plot? maybe a violin plot or something like that? or a 1-dimensional heatmap that is thickened for easier visibility? |
I think I would just draw the boxplot without drawing the points in the initial version but perhaps the rest of @cBioPortal/product have a stronger preference for another solution? |
Thats a good point, I hadnt thought of that |
Good idea. But it would be nice if there was an option to enable the individual points...
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Stemming from discussion - users will be able to select any 2 data sources and plot them against each other. These plots will be interactable in the same way as other study view charts: for filtering the cohort interactively.
The first step is to expand Mutation Count vs FGA to arbitrary numerical clinical vs numerical clinical attributes. Support arbitrary numerical clinical vs numerical clinical charts in study view cbioportal#8867
From there, we'll build out to categorical clinical vs numerical clinical (violin plot table).
Arbitrary categorical vs numerical plots in study view #307
From there, we can do categorical clinical vs categorical clinical (stacked bar).
Finally, from there we can start to build out into other data types. (TBD)
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