You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The frequencies listed in the Altered group and Unaltere group columns are percentage would appear to be a percentage of the overall number of samples in these respective groups. In fact, they are a percentage of samples what are profiled for the gene (corresponding to each row). For this reason, the denominator may change by row and the percentages can't always be compared row by row. We need to
Edit the tooltip of the column headers to indicate this:
Altered group: Number (percentage) of samples in Altered group that are profiled for, and altered in, listed gene.
Add tooltip to each cell in row that indicates the same but prints the actual gene. E.g.:
"Number (percentage) of samples in Altered group that are profiled for, and altered in, EGFR"
The text was updated successfully, but these errors were encountered:
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.
Here is a better example - genes with different denominators: https://bit.ly/45SpUMp - click Gene column to order.
I think we can add the denominators in the tooltip for the row, similar to the co-occurrence column, so instead of saying "Number (percentage) of samples in Altered group that are profiled for, and altered in, EGFR" we can say "x samples in Altered group are profiled for [gene name], y (z%) of which are altered in [gene name]"
Example query
The frequencies listed in the Altered group and Unaltere group columns are percentage would appear to be a percentage of the overall number of samples in these respective groups. In fact, they are a percentage of samples what are profiled for the gene (corresponding to each row). For this reason, the denominator may change by row and the percentages can't always be compared row by row. We need to
Edit the tooltip of the column headers to indicate this:
Altered group: Number (percentage) of samples in Altered group that are profiled for, and altered in, listed gene.
Add tooltip to each cell in row that indicates the same but prints the actual gene. E.g.:
"Number (percentage) of samples in Altered group that are profiled for, and altered in, EGFR"
The text was updated successfully, but these errors were encountered: