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Include/Exclude NA values in Categorical Clinical Data to get idea of data availability in each group #225

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inodb opened this issue Nov 3, 2021 · 0 comments

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inodb commented Nov 3, 2021

Maybe we can use a checkbox like we do for the study view to include/exclude NA like values (e.g. "Unknown')

Note that in the statistical testing we don't have a good way to share NA like values between frontend/backend. Both are hardcoded. It might be good to specifically pass the NA like values to the enrichment api endpoint from the frontend to avoid this. Or we could add it as a property in portal.properties or something. Could lead to strange results if the testing uses a different set of NA values than the frontend (EDIT: we decided to add it as a property to portal.properties and manage it at the instance level)

@inodb inodb mentioned this issue Nov 3, 2021
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@inodb inodb changed the title Make some UI that allows one to include/exclude NA values in the plot of the clinical data comparison. Similar to how we have on the study view. They should prolly always be excluded from the comparison computation itself, but it's nice to get an idea of data availability per group. Include/Exclude NA values in Categorical Clinical Data to get idea of data availability in each group Nov 3, 2021
@JREastonMarks JREastonMarks transferred this issue from cBioPortal/cbioportal Mar 1, 2024
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