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Slight mutation count discrepancy on genie #38

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alisman opened this issue Aug 13, 2024 · 0 comments
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Slight mutation count discrepancy on genie #38

alisman opened this issue Aug 13, 2024 · 0 comments
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@alisman
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alisman commented Aug 13, 2024

The counts differ by a single sample between clickhouse and legacy on genie study. Other studies seem to match.
fetch("https://genie-public-beta1.cbioportal.org/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&", {
"headers": {
"accept": "/",
"accept-language": "en-US,en;q=0.9",
"cache-control": "no-cache",
"content-type": "application/json",
"pragma": "no-cache",
"priority": "u=1, i",
"sec-ch-ua": ""Not)A;Brand";v="99", "Google Chrome";v="127", "Chromium";v="127"",
"sec-ch-ua-mobile": "?0",
"sec-ch-ua-platform": ""macOS"",
"sec-fetch-dest": "empty",
"sec-fetch-mode": "cors",
"sec-fetch-site": "same-site"
},
"referrer": "https://genie-public-beta.cbioportal.org/",
"referrerPolicy": "strict-origin-when-cross-origin",
"body": "{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"studyIds":["genie_public"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}}",
"method": "POST",
"mode": "cors",
"credentials": "omit"
});

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