-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Slight mutation count discrepancy on genie #38
Comments
This was referenced Sep 4, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
The counts differ by a single sample between clickhouse and legacy on genie study. Other studies seem to match.
fetch("https://genie-public-beta1.cbioportal.org/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&", {
"headers": {
"accept": "/",
"accept-language": "en-US,en;q=0.9",
"cache-control": "no-cache",
"content-type": "application/json",
"pragma": "no-cache",
"priority": "u=1, i",
"sec-ch-ua": ""Not)A;Brand";v="99", "Google Chrome";v="127", "Chromium";v="127"",
"sec-ch-ua-mobile": "?0",
"sec-ch-ua-platform": ""macOS"",
"sec-fetch-dest": "empty",
"sec-fetch-mode": "cors",
"sec-fetch-site": "same-site"
},
"referrer": "https://genie-public-beta.cbioportal.org/",
"referrerPolicy": "strict-origin-when-cross-origin",
"body": "{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"studyIds":["genie_public"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}}",
"method": "POST",
"mode": "cors",
"credentials": "omit"
});
The text was updated successfully, but these errors were encountered: