SUMMARY.md

Table of contents

• Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat.

INTRODUCTION

• Exploring MicrobiomeStat: A Consideration for Your Research Toolkit

Setting Up MicrobiomeStat: Installation and Data Preparation

• Installation Guide
• Creating the MicrobiomeStat Data Object
  • Building MicrobiomeStat from Matrix and Data.frame
  • Converting Data from Phyloseq into MicrobiomeStat
  • Importing Data from QIIME2 into MicrobiomeStat
  • Importing Data from BIOM into MicrobiomeStat
  • Converting SummarizedExperiment into MicrobiomeStat
  • Converting DGEList Data into MicrobiomeStat
  • Converting DESeqDataSet into MicrobiomeStat
  • Importing Data from DADA2 into MicrobiomeStat
  • Importing Data from Mothur into MicrobiomeStat

Single-Point Analysis

• Introduction
• Alpha Diversity Analysis
• Beta Diversity Analysis
• Feature-level Analysis
• One-Click Reports Generation

Paired Samples Analysis

• Introduction
• Alpha Diversity Analysis
• Beta Diversity Analysis
• Feature-level Analysis
• One-Click Reports Generation

Longitudinal Analysis

• Introduction
• Alpha Diversity Analysis
• Beta Diversity Analysis
• Feature-level Analysis
• One-Click Reports Generation

Data Manipulation and Transformation

• Data Summary
• Data Aggregation
• Data Normalization
• Data Filtering
• Data Validation
• Data Combination
• Metadata Management
• Color Palette

Frequently Asked Questions (FAQ)

• General FAQs