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@article{Roberts2017,
author = {Roberts, David R. and Bahn, Volker and Ciuti, Simone and Boyce, Mark S. and Elith, Jane and Guillera-Arroita, Gurutzeta and Hauenstein, Severin and Lahoz-Monfort, José J. and Schröder, Boris and Thuiller, Wilfried and Warton, David I. and Wintle, Brendan A. and Hartig, Florian and Dormann, Carsten F.},
title = {Cross-validation strategies for data with temporal, spatial, hierarchical, or phylogenetic structure},
journal = {Ecography},
volume = {40},
number = {8},
pages = {913-929},
doi = {https://doi.org/10.1111/ecog.02881},
year = {2017}
}
@Article{RandomFields,
title = {Analysis, Simulation and Prediction of Multivariate Random Fields with Package {RandomFields}},
author = {Martin Schlather and Alexander Malinowski and Peter J. Menck and Marco Oesting and Kirstin Strokorb},
journal = {Journal of Statistical Software},
year = {2015},
volume = {63},
number = {8},
pages = {1--25},
doi = {10.18637/jss.v063.i08},
}
@article{Breiman2001,
author = {Breiman, Leo},
title = "{Random Forests}",
journal = {Machine Learning},
volume = {45},
pages = {5-32},
year = {2001},
doi = {10.1023/A:1010933404324},
}
@Article{ranger,
title = {{ranger}: A Fast Implementation of Random Forests for High Dimensional Data in {C++} and {R}},
author = {Marvin N. Wright and Andreas Ziegler},
journal = {Journal of Statistical Software},
year = {2017},
volume = {77},
number = {1},
pages = {1--17},
doi = {10.18637/jss.v077.i01},
}
@Manual{parsnip,
title = {{parsnip}: A Common {API} to Modeling and Analysis Functions},
author = {Max Kuhn and Davis Vaughan},
year = {2022},
note = {R package version 1.0.0},
url = {https://CRAN.R-project.org/package=parsnip},
}
@Manual{workflows,
title = {{workflows}: Modeling Workflows},
author = {Davis Vaughan},
year = {2022},
note = {R package version 0.2.6},
url = {https://CRAN.R-project.org/package=workflows},
}
@Manual{spatialsample,
title = {{spatialsample}: Spatial Resampling Infrastructure},
author = {Michael Mahoney and Julia Silge},
year = {2022},
note = {R package version 0.3.0},
url = {https://CRAN.R-project.org/package=spatialsample},
}
@misc{Probst2018,
doi = {10.48550/ARXIV.1802.09596},
author = {Probst, Philipp and Bischl, Bernd and Boulesteix, Anne-Laure},
title = {Tunability: Importance of Hyperparameters of Machine Learning Algorithms},
publisher = {arXiv},
year = {2018},
copyright = {arXiv.org perpetual, non-exclusive license}
}
@book{Kuhn2013,
title={Applied predictive modeling},
author={Kuhn, Max and Johnson, Kjell},
volume={26},
year={2013},
publisher={Springer},
doi = {10.1007/978-1-4614-6849-3}
}
@Manual{R,
title = {{R}: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{dials,
title = {{dials}: Tools for Creating Tuning Parameter Values},
author = {Max Kuhn and Hannah Frick},
year = {2022},
note = {R package version 1.0.0},
url = {https://CRAN.R-project.org/package=dials},
}
@Manual{yardstick,
title = {{yardstick}: Tidy Characterizations of Model Performance},
author = {Max Kuhn and Davis Vaughan},
year = {2022},
note = {R package version 1.0.0},
url = {https://CRAN.R-project.org/package=yardstick},
}
@Manual{tune,
title = {{tune}: Tidy Tuning Tools},
author = {Max Kuhn},
year = {2022},
note = {R package version 0.2.0},
url = {https://CRAN.R-project.org/package=tune},
}
@Manual{rsample,
title = {{rsample}: General Resampling Infrastructure},
author = {Hannah Frick and Fanny Chow and Max Kuhn and Michael Mahoney and Julia Silge and Hadley Wickham},
year = {2022},
note = {R package version 1.1.1},
url = {https://CRAN.R-project.org/package=rsample},
}
@Manual{s2,
title = {{s2}: Spherical Geometry Operators Using the {S2} Geometry Library},
author = {Dewey Dunnington and Edzer Pebesma and Ege Rubak},
year = {2021},
note = {R package version 1.0.7},
url = {https://CRAN.R-project.org/package=s2},
}
@Article{sf,
author = {Edzer Pebesma},
title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
year = {2018},
journal = {{The R Journal}},
doi = {10.32614/RJ-2018-009},
pages = {439--446},
volume = {10},
number = {1},
}
@book{tmwr,
title={Tidy Modeling with {R}},
author={Kuhn, Max and Silge, Julia},
year={2022},
publisher={O'Reilly}
}
@article{debruin2022,
title = {Dealing with clustered samples for assessing map accuracy by cross-validation},
author = {de Bruin, Sytze and Brus, Dick J. and Heuvelink, Gerard B.M. and van Ebbenhorst Tengbergen, Tom and Wadoux, Alexandre M.J-C.},
year = {2022},
month = {07},
date = {2022-07},
journal = {Ecological Informatics},
pages = {101665},
volume = {69},
doi = {10.1016/j.ecoinf.2022.101665},
langid = {en}
}
@article{meyer2022,
title = {Machine learning-based global maps of ecological variables and the challenge of assessing them},
author = {Meyer, Hanna and Pebesma, Edzer},
year = {2022},
month = {04},
date = {2022-04-22},
journal = {Nature Communications},
volume = {13},
number = {1},
doi = {10.1038/s41467-022-29838-9},
langid = {en}
}
@article{milà2022,
title = {Nearest neighbour distance matching
Leave{-}One{-}Out Cross{-}Validation
for map validation},
author = {{Milà}, Carles and Mateu, Jorge and Pebesma, Edzer and Meyer, Hanna},
year = {2022},
month = {04},
date = {2022-04-07},
journal = {Methods in Ecology and Evolution},
pages = {1304--1316},
volume = {13},
number = {6},
doi = {10.1111/2041-210x.13851},
langid = {en}
}
@article{meyer2021,
title = {Predicting into unknown space? Estimating the area of applicability of spatial prediction models},
author = {Meyer, Hanna and Pebesma, Edzer},
year = {2021},
month = {07},
date = {2021-07-26},
journal = {Methods in Ecology and Evolution},
pages = {1620--1633},
volume = {12},
number = {9},
doi = {10.1111/2041-210x.13650},
langid = {en}
}
@article{meyer2018,
title = {Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation},
author = {Meyer, Hanna and Reudenbach, Christoph and Hengl, Tomislav and Katurji, Marwan and Nauss, Thomas},
year = {2018},
month = {03},
date = {2018-03},
journal = {Environmental Modelling \& Software},
pages = {1--9},
volume = {101},
doi = {10.1016/j.envsoft.2017.12.001},
langid = {en}
}
@article{brenning2012,
title = {Spatial cross-validation and bootstrap for the assessment of prediction rules in remote sensing: The {R} package {sperrorest}},
author = {Brenning, Alexander},
year = {2012},
month = {07},
date = {2012-07},
journal = {2012 IEEE International Geoscience and Remote Sensing Symposium},
doi = {10.1109/igarss.2012.6352393},
}
@article{valavi2018,
title = {{blockCV}: An {R} package for generating spatially or environmentally separated folds for k-fold cross-validation of species distribution models},
author = {Valavi, Roozbeh and Elith, Jane and {Lahoz{-}Monfort}, {José J.} and {Guillera{-}Arroita}, Gurutzeta},
editor = {Warton, David},
year = {2018},
month = {11},
date = {2018-11-08},
journal = {Methods in Ecology and Evolution},
pages = {225--232},
volume = {10},
number = {2},
doi = {10.1111/2041-210x.13107},
langid = {en}
}
@article{walvoort2010,
title = {An {R} package for spatial coverage sampling and random sampling from compact geographical strata by k-means},
author = {Walvoort, D.J.J. and Brus, D.J. and de Gruijter, J.J.},
year = {2010},
month = {10},
date = {2010-10},
journal = {Computers \& Geosciences},
pages = {1261--1267},
volume = {36},
number = {10},
doi = {10.1016/j.cageo.2010.04.005},
langid = {en}
}
@book{osullivan2010,
title = {Geographic Information Analysis},
author = {{O'Sullivan}, David and Unwin, David J.},
year = {2010},
month = {03},
date = {2010-03-10},
doi = {10.1002/9780470549094},
publisher = {John Wiley \& Sons, Inc}
}
@Article{units,
title = {Measurement Units in {R}},
author = {Edzer Pebesma and Thomas Mailund and James Hiebert},
year = {2016},
journal = {R Journal},
doi = {10.32614/RJ-2016-061},
pages = {486--494},
volume = {8},
number = {2},
}
@article{stehman2019,
title = {Key issues in rigorous accuracy assessment of land cover products},
author = {Stehman, Stephen V. and Foody, Giles M.},
year = {2019},
month = {09},
date = {2019-09},
journal = {Remote Sensing of Environment},
pages = {111199},
volume = {231},
doi = {10.1016/j.rse.2019.05.018},
langid = {en}
}
@article{wadoux2021,
title = {Spatial cross-validation is not the right way to evaluate map accuracy},
author = {Wadoux, Alexandre M.J.-C. and Heuvelink, Gerard B.M. and de Bruin, Sytze and Brus, Dick J.},
year = {2021},
month = {10},
date = {2021-10},
journal = {Ecological Modelling},
pages = {109692},
volume = {457},
doi = {10.1016/j.ecolmodel.2021.109692},
langid = {en}
}
@article{Stone1974,
ISSN = {00359246},
URL = {http://www.jstor.org/stable/2984809},
abstract = {A generalized form of the cross-validation criterion is applied to the choice and assessment of prediction using the data-analytic concept of a prescription. The examples used to illustrate the application are drawn from the problem areas of univariate estimation, linear regression and analysis of variance.},
author = {M. Stone},
journal = {Journal of the Royal Statistical Society. Series B (Methodological)},
number = {2},
pages = {111-147},
publisher = {[Royal Statistical Society, Wiley]},
title = {Cross-Validatory Choice and Assessment of Statistical Predictions},
volume = {36},
year = {1974}
}
@book{kuhn2019,
title = {Feature Engineering and Selection},
author = {Kuhn, Max and Johnson, Kjell},
year = {2019},
month = {07},
date = {2019-07-25},
publisher = {Chapman and Hall/CRC},
doi = {10.1201/9781315108230},
}
@misc{Bates2021,
title={Cross-validation: what does it estimate and how well does it do it? arXiv:2104.00673v2 [stat.ME]},
author={Stephen Bates and Trevor Hastie and Robert Tibshirani},
year={2021},
eprint={2104.00673},
archivePrefix={arXiv},
note={arXiv:2104.00673 [stat.ME]},
primaryClass={stat.ME},
doi = {10.48550/arXiv.2104.00673}
}
@article{martin2012,
title = {Mapping where ecologists work: biases in the global distribution of terrestrial ecological observations},
author = {Martin, Laura J and Blossey, Bernd and Ellis, Erle},
year = {2012},
month = {05},
date = {2012-05},
journal = {Frontiers in Ecology and the Environment},
pages = {195--201},
volume = {10},
number = {4},
doi = {10.1890/110154},
langid = {en}
}
@article{yates2018,
title = {Outstanding Challenges in the Transferability of Ecological Models},
author = {Yates, Katherine L. and Bouchet, Phil J. and Caley, M. Julian and Mengersen, Kerrie and Randin, Christophe F. and Parnell, Stephen and Fielding, Alan H. and Bamford, Andrew J. and Ban, Stephen and Barbosa, {A. Márcia} and Dormann, Carsten F. and Elith, Jane and Embling, Clare B. and Ervin, Gary N. and Fisher, Rebecca and Gould, Susan and Graf, Roland F. and Gregr, Edward J. and Halpin, Patrick N. and Heikkinen, Risto K. and {Heinänen}, Stefan and Jones, Alice R. and Krishnakumar, Periyadan K. and Lauria, Valentina and Lozano-Montes, Hector and Mannocci, Laura and Mellin, Camille and Mesgaran, Mohsen B. and Moreno-Amat, Elena and Mormede, Sophie and Novaczek, Emilie and Oppel, Steffen and {Ortuño Crespo}, Guillermo and Peterson, A. Townsend and Rapacciuolo, Giovanni and Roberts, Jason J. and Ross, Rebecca E. and Scales, Kylie L. and Schoeman, David and Snelgrove, Paul and Sundblad, {Göran} and Thuiller, Wilfried and Torres, Leigh G. and Verbruggen, Heroen and Wang, Lifei and Wenger, Seth and Whittingham, Mark J. and Zharikov, Yuri and Zurell, Damaris and Sequeira, Ana M.M.},
year = {2018},
month = {10},
date = {2018-10},
journal = {Trends in Ecology \& Evolution},
pages = {790--802},
volume = {33},
number = {10},
doi = {10.1016/j.tree.2018.08.001},
langid = {en}
}
@article{wenger2012,
title = {Assessing transferability of ecological models: an underappreciated aspect of statistical validation},
author = {Wenger, Seth J. and Olden, Julian D.},
year = {2012},
month = {01},
date = {2012-01-23},
journal = {Methods in Ecology and Evolution},
pages = {260--267},
volume = {3},
number = {2},
doi = {10.1111/j.2041-210x.2011.00170.x},
langid = {en}
}
@article{lerest2014,
title = {Spatial leave-one-out cross-validation for variable selection in the presence of spatial autocorrelation},
author = {Le Rest, {Kévin} and Pinaud, David and Monestiez, Pascal and Chadoeuf, {Joël} and Bretagnolle, Vincent},
year = {2014},
month = {04},
date = {2014-04-01},
journal = {Global Ecology and Biogeography},
pages = {811--820},
volume = {23},
number = {7},
doi = {10.1111/geb.12161},
langid = {en}
}
@article{telford2009,
title = {Evaluation of transfer functions in spatially structured environments},
author = {Telford, R.J. and Birks, H.J.B.},
year = {2009},
month = {06},
date = {2009-06},
journal = {Quaternary Science Reviews},
pages = {1309--1316},
volume = {28},
number = {13-14},
doi = {10.1016/j.quascirev.2008.12.020},
langid = {en}
}
@article{karasiak2021,
title = {Spatial dependence between training and test sets: another pitfall of classification accuracy assessment in remote sensing},
author = {Karasiak, N. and Dejoux, J.-F. and Monteil, C. and Sheeren, D.},
year = {2021},
month = {04},
date = {2021-04-26},
journal = {Machine Learning},
pages = {2715--2740},
volume = {111},
number = {7},
doi = {10.1007/s10994-021-05972-1},
langid = {en}
}
@article{varma2006,
title = {Bias in error estimation when using cross-validation for model selection},
author = {Varma, Sudhir and Simon, Richard},
year = {2006},
month = {02},
date = {2006-02-23},
journal = {BMC Bioinformatics},
volume = {7},
number = {1},
doi = {10.1186/1471-2105-7-91},
langid = {en}
}
@Article{automap,
title = {Real-time automatic interpolation of ambient gamma dose rates from the Dutch Radioactivity Monitoring Network},
author = {P.H. Hiemstra and E.J. Pebesma and C.J.W. {Twenhöfel} and G.B.M. Heuvelink},
journal = {Computers \& Geosciences},
year = {2008},
doi = {10.1016/j.cageo.2008.10.011},
}
@article{pohjankukka2017,
title = {Estimating the prediction performance of spatial models via spatial k-fold cross validation},
author = {Pohjankukka, Jonne and Pahikkala, Tapio and Nevalainen, Paavo and Heikkonen, Jukka},
year = {2017},
month = {07},
date = {2017-07-05},
journal = {International Journal of Geographical Information Science},
pages = {2001--2019},
volume = {31},
number = {10},
doi = {10.1080/13658816.2017.1346255},
langid = {en}
}
@article{degruijter1990,
title = {Model-free estimation from spatial samples: A reappraisal of classical sampling theory},
author = {de Gruijter, J. J. and ter Braak, C. J. F.},
year = {1990},
month = {05},
date = {1990-05},
journal = {Mathematical Geology},
pages = {407--415},
volume = {22},
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langid = {en}
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@article{brus2020,
title = {Statistical approaches for spatial sample survey: Persistent misconceptions and new developments},
author = {Brus, Dick J.},
year = {2020},
month = {06},
date = {2020-06-22},
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pages = {686--703},
volume = {72},
number = {2},
doi = {10.1111/ejss.12988},
langid = {en}
}
@article{bahn2012,
title = {Testing the predictive performance of distribution models},
author = {Bahn, Volker and McGill, Brian J.},
year = {2012},
month = {12},
date = {2012-12-18},
journal = {Oikos},
pages = {321--331},
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