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Guidance to set nc_nCells and nc_nComp parameters #26

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Rohit-Satyam opened this issue Dec 28, 2023 · 1 comment
Open

Guidance to set nc_nCells and nc_nComp parameters #26

Rohit-Satyam opened this issue Dec 28, 2023 · 1 comment

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@Rohit-Satyam
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Rohit-Satyam commented Dec 28, 2023 •
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Hi @dosorio

I have a single cell dataset containing 30K cells and am performing KO of a few genes. I wish to understand how the choice of nc_nCells and nc_nComp would affect my results. Currently, I set nc_nCells=1000 but I don't know if that should be sufficient when you have 30K cells. In addition, should I increase nc_nComp? Computational power is not the limitation in my case, neither is the time.
@Rohit-Satyam
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@dosorio Can you please drop some insights?

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