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YNet

Dataset

The dataset used is available in this post.

A total of 87 pathologists diagnosed a randomly assigned subset of 60 slides into four diagnostic categories producing an average of 22 diagnostic labels per case. The average size of these ROIs is 10,000×12,000. Out of these 200 ROIs have been used.

The four diagnostic categories are : i) benign ii) atypia iii) ductal carcinomain situ iv) invasive cancer

Patch Size used : 256 X 256

Image Format : RGB

Pre-Processing : 256 X 256 patches are cropped from the high redolution ( 10000 X 12000 ) images without any overlap. As there is no seperate test dataset 15% of the extracted patches are kept aside for testing and the rest are used for training. Pixel values are normalized before training.

Magnification : 100x

Model

Y-net:

model architecture

Citation

  title={{Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images}},
  author={Sachin Mehta and Ezgi Mercan and Jamen Bartlett and Donald Weaver and Joann  Elmore and Linda Shapiro},
  booktitle={International Conference on Medical image computing and computer-assisted intervention},
  year={2018},
  organization={Springer}
}