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Figure out how to add demographic information to GDC head-and-mouth data #24

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gaurav opened this issue Oct 11, 2021 · 3 comments · Fixed by #43
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Figure out how to add demographic information to GDC head-and-mouth data #24

gaurav opened this issue Oct 11, 2021 · 3 comments · Fixed by #43
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@gaurav
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gaurav commented Oct 11, 2021

The GDC import doesn't include demographic information. We should modify the import at https://github.com/cancerDHC/example-data/blob/main/head-and-mouth/Head%20and%20Mouth%20Cancer%20Datasets.ipynb to include this information.

Related to #6.

@gaurav
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gaurav commented Oct 11, 2021

I have a suspicion that this might be as easy as modifying "expand": "diagnoses,samples" to "expand": "diagnoses,samples,demographic", but it probably isn't that easy :)

@jooho-lee-kim
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It was easy like that.
Do we want to update gdc-head-and-mouth.json file to include demographic portion of data?

@gaurav
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gaurav commented Dec 2, 2021

Yes, please!

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