Can I use a specific gene set instead of the one in msigdbr?

[Phoenix12580]

There are no parameter settings in runGSEA that would allow the user to perform gene set specific enrichment
What should I do if I want to enrich for a specified set of genes?
Thank you very much for your work, this is a very good tool!

[mass-a]

Hello!
you are correct, currently runGSEA() only runs against MSigDB gene sets. I'll add the "enhancement" tag, we may implement custom gene sets in the future.
In fact this function is a simple wrapper to fgsea::fora() - perhaps in the meantime you should be able to edit the function to take a custom gene set?
Best
-massimo